Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AABJ89_RS04040 Genome accession   NZ_AP027570
Coordinates   848134..848610 (-) Length   158 a.a.
NCBI ID   WP_001297237.1    Uniprot ID   -
Organism   Escherichia coli strain LR-60     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 843134..853610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ89_RS04000 - 844169..844339 (-) 171 Protein_786 IS110 family transposase -
  AABJ89_RS04005 (VEE03_07800) - 844681..845523 (-) 843 WP_032152755.1 DUF4942 domain-containing protein -
  AABJ89_RS04010 (VEE03_07810) - 845608..845805 (-) 198 WP_032152719.1 DUF957 domain-containing protein -
  AABJ89_RS04015 (VEE03_07820) - 845817..846305 (-) 489 WP_001774608.1 DUF5983 family protein -
  AABJ89_RS04020 (VEE03_07830) - 846302..846679 (-) 378 WP_001774607.1 TA system toxin CbtA family protein -
  AABJ89_RS04025 (VEE03_07840) cbeA 846769..847137 (-) 369 WP_001774606.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  AABJ89_RS04030 (VEE03_07850) - 847187..847831 (-) 645 WP_001774605.1 hypothetical protein -
  AABJ89_RS04035 (VEE03_07860) - 847850..848071 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  AABJ89_RS04040 (VEE03_07870) radC 848134..848610 (-) 477 WP_001297237.1 RadC family protein Machinery gene
  AABJ89_RS04045 (VEE03_07880) - 848626..849105 (-) 480 WP_032152717.1 antirestriction protein -
  AABJ89_RS04050 (VEE03_07900) - 849444..850262 (-) 819 WP_016238867.1 DUF932 domain-containing protein -
  AABJ89_RS04055 (VEE03_07910) - 850361..850594 (-) 234 WP_001278287.1 DUF905 family protein -
  AABJ89_RS04060 (VEE03_07920) - 850600..851277 (-) 678 WP_001097305.1 hypothetical protein -
  AABJ89_RS04065 - 851425..852105 (-) 681 WP_032082725.1 WYL domain-containing protein -
  AABJ89_RS04070 (VEE03_07930) - 852308..853192 (-) 885 WP_001116802.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17691.29 Da        Isoelectric Point: 7.2020

>NTDB_id=87488 AABJ89_RS04040 WP_001297237.1 848134..848610(-) (radC) [Escherichia coli strain LR-60]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLTHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=87488 AABJ89_RS04040 WP_001297237.1 848134..848610(-) (radC) [Escherichia coli strain LR-60]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGACACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment