Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   Q7W82_RS05900 Genome accession   NZ_CP131914
Coordinates   1369230..1370369 (-) Length   379 a.a.
NCBI ID   WP_017907532.1    Uniprot ID   A0A6N7QD09
Organism   Xanthomonas indica strain PPL560     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1364230..1375369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W82_RS05880 (Q7W82_05870) queD 1364842..1365201 (-) 360 WP_010343828.1 6-carboxytetrahydropterin synthase QueD -
  Q7W82_RS05885 (Q7W82_05875) - 1365377..1366750 (-) 1374 WP_242159705.1 DEAD/DEAH box helicase -
  Q7W82_RS05890 (Q7W82_05880) - 1367096..1368085 (+) 990 WP_242159706.1 fumarylacetoacetate hydrolase family protein -
  Q7W82_RS05895 (Q7W82_05885) maiA 1368175..1368831 (+) 657 WP_242159707.1 maleylacetoacetate isomerase -
  Q7W82_RS05900 (Q7W82_05890) pilU 1369230..1370369 (-) 1140 WP_017907532.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  Q7W82_RS05905 (Q7W82_05895) - 1370469..1370861 (+) 393 WP_048491628.1 DUF4398 domain-containing protein -
  Q7W82_RS05910 (Q7W82_05900) - 1370879..1371751 (+) 873 WP_242159754.1 hypothetical protein -
  Q7W82_RS05915 (Q7W82_05905) - 1372086..1372304 (+) 219 WP_010340228.1 YdcH family protein -
  Q7W82_RS05920 (Q7W82_05910) - 1372496..1373866 (+) 1371 WP_242159708.1 pyridoxal-phosphate dependent enzyme -
  Q7W82_RS05925 (Q7W82_05915) - 1373951..1375135 (+) 1185 WP_242159709.1 cystathionine gamma-synthase -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42083.38 Da        Isoelectric Point: 6.2387

>NTDB_id=866115 Q7W82_RS05900 WP_017907532.1 1369230..1370369(-) (pilU) [Xanthomonas indica strain PPL560]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGATGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALQDAGR
FRVNVFKQRGEVGMVIRAIRSKIPSIEELHLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDYRNSTTTGHILTIED
PIEYLHKHKMSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLSLNLRAVISQRLVKDSSGRRRPASEVLLNTPMIRDLLRRGQVHEIKQAMEESLEEGMETFDQCL
FRMVKQGQIEQEEALRAADSRDGLALKFRLSEGGSGEHDPYADYDSGPSAAPRITHGFV

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=866115 Q7W82_RS05900 WP_017907532.1 1369230..1370369(-) (pilU) [Xanthomonas indica strain PPL560]
ATGGATATCGGCTATTTCCTGAAGCTGATGACCGAAAAGAACGCCTCGGACATGTTCCTGACCACAGGAGCACCGGTCTA
TATCAAGATCGAAGGCAAGCTGTACCCGCTCGGCGCCACCGGCCTGCCGCCGGGCATGGTCAAGAAGATCGCCTACTCGC
TGATGGACGAAGGCCAGGTGCCGCAGTTCGAGCGGGAGCTGGAATTGAACATGGCCATCGCCCTGCAGGACGCCGGGCGC
TTCCGCGTCAACGTGTTCAAGCAGCGCGGCGAGGTCGGCATGGTGATCCGCGCGATCCGCAGCAAGATCCCCAGCATCGA
GGAGCTGCACCTGCCGCAGGTGCTCAAGGACGTGATCATGACCCCGCGCGGGCTGGTCCTGGTGGTCGGCTCGACCGGCT
CGGGCAAGTCCACCTCGCTGGCCTCGATGATCGACTACCGCAACAGCACCACCACCGGGCACATCCTCACCATCGAGGAC
CCGATCGAATACCTGCACAAGCACAAGATGTCCATCGTCAACCAGCGCGAGGTCGGGCTGGACACCCACGCCTTCCACAA
CGCACTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCCTGATCGGCGAGATCCTGGACGCGGAGACCATGGAGGCGG
CCATCGCCTTCGCCGAGACCGGGCACCTGTGCCTGGCCACCCTGCACTCCAACAACGCCGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCCGAGAGCGCGCACAAGAACGTGCTGATGAACCTGTCGCTGAACCTGCGCGCGGTGATCTCGCAGCG
CCTGGTCAAGGACAGCAGCGGCCGCCGCCGGCCGGCCTCGGAAGTGCTGTTGAACACGCCGATGATCCGCGACCTGCTGC
GCCGCGGCCAGGTCCACGAGATCAAGCAGGCGATGGAGGAATCGCTGGAGGAAGGCATGGAGACCTTCGACCAGTGCCTG
TTCCGCATGGTCAAGCAGGGCCAGATCGAGCAGGAGGAAGCGCTGCGCGCGGCCGACTCGCGCGACGGCCTGGCCTTGAA
GTTCCGCCTGTCCGAAGGCGGCAGCGGCGAACACGATCCCTACGCCGACTACGACAGCGGCCCCAGCGCCGCGCCGCGCA
TCACCCACGGCTTCGTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(47-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N7QD09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

52.089

94.723

0.493
  pilU Vibrio cholerae strain A1552

49.722

94.987

0.472
  pilU Acinetobacter baylyi ADP1

50

93.404

0.467
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.18

99.736

0.441
  pilT Pseudomonas aeruginosa PAK

43.491

89.182

0.388
  pilT Acinetobacter nosocomialis M2

42.308

89.182

0.377
  pilT Acinetobacter baumannii D1279779

42.308

89.182

0.377
  pilT Acinetobacter baumannii strain A118

42.308

89.182

0.377
  pilT Acinetobacter baylyi ADP1

41.471

89.71

0.372
  pilT Neisseria meningitidis 8013

40.346

91.557

0.369
  pilT Neisseria gonorrhoeae MS11

40.346

91.557

0.369
  pilT Legionella pneumophila strain Lp02

41.42

89.182

0.369
  pilT Legionella pneumophila strain ERS1305867

41.42

89.182

0.369
  pilT Pseudomonas stutzeri DSM 10701

41.916

88.127

0.369
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.441

87.863

0.364
  pilT Vibrio cholerae strain A1552

41.441

87.863

0.364