Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | Q5Z11_RS03775 | Genome accession | NZ_CP130832 |
| Coordinates | 845542..846672 (-) | Length | 376 a.a. |
| NCBI ID | WP_303748790.1 | Uniprot ID | - |
| Organism | Stenotrophomonas sp. 610A2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 840542..851672
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q5Z11_RS03760 | - | 841643..843043 (-) | 1401 | WP_303748787.1 | DEAD/DEAH box helicase | - |
| Q5Z11_RS03765 | - | 843415..844404 (+) | 990 | WP_303748788.1 | fumarylacetoacetate hydrolase family protein | - |
| Q5Z11_RS03770 | maiA | 844499..845155 (+) | 657 | WP_303748789.1 | maleylacetoacetate isomerase | - |
| Q5Z11_RS03775 | pilU | 845542..846672 (-) | 1131 | WP_303748790.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| Q5Z11_RS03780 | - | 846770..847156 (+) | 387 | WP_303748791.1 | DUF4398 domain-containing protein | - |
| Q5Z11_RS03785 | - | 847156..848037 (+) | 882 | WP_303748792.1 | hypothetical protein | - |
| Q5Z11_RS03790 | - | 848366..848584 (+) | 219 | WP_282266820.1 | YdcH family protein | - |
| Q5Z11_RS03795 | - | 848763..850133 (+) | 1371 | WP_303748793.1 | pyridoxal-phosphate dependent enzyme | - |
| Q5Z11_RS03800 | - | 850226..851425 (+) | 1200 | WP_303748794.1 | cystathionine gamma-synthase | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41425.69 Da Isoelectric Point: 6.3740
>NTDB_id=861489 Q5Z11_RS03775 WP_303748790.1 845542..846672(-) (pilU) [Stenotrophomonas sp. 610A2]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERDLELNMAIALADAGR
FRVNVFKQRGEVGMVIRAIKSRIPSIEELNLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTSTGHILTIED
PIEFLHKHKQSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQAIERI
LNFFPESAHKNVLMNLSLNLRGVISQRLVKGKDGRRRPATEVLLNTPMIRDLLRRGEVHAIKQAMEESLEEGMQSFDQCL
FRMAKDGIIEQEEALRAADSRDGLALKFRLSEGGTGEHDPYADFAASAPAAITHGF
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERDLELNMAIALADAGR
FRVNVFKQRGEVGMVIRAIKSRIPSIEELNLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTSTGHILTIED
PIEFLHKHKQSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQAIERI
LNFFPESAHKNVLMNLSLNLRGVISQRLVKGKDGRRRPATEVLLNTPMIRDLLRRGEVHAIKQAMEESLEEGMQSFDQCL
FRMAKDGIIEQEEALRAADSRDGLALKFRLSEGGTGEHDPYADFAASAPAAITHGF
Nucleotide
Download Length: 1131 bp
>NTDB_id=861489 Q5Z11_RS03775 WP_303748790.1 845542..846672(-) (pilU) [Stenotrophomonas sp. 610A2]
ATGGATATCGGCTATTTCTTGAAGCTGATGACCGAAAAGAACGCTTCGGACATGTTTTTGACCACCGGAGCGCCGGTTTA
CATCAAGATTGAAGGCAAGCTGTACCCGCTGGGCAATACCGGCCTGCCGCCGGGGATGGTCAAGAAAATCGCCTATTCGC
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGACCTGGAGCTCAACATGGCCATCGCCCTGGCCGACGCCGGGCGC
TTCCGCGTCAATGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTCATCCGTGCGATCAAGAGCCGCATTCCCAGCATCGA
GGAGCTCAACCTCCCGCAGGTGCTGAAGGACGTGATCATGACCCCGCGCGGGCTGGTACTGGTGGTCGGCTCGACCGGCT
CGGGCAAGTCGACCTCGCTGGCCTCGATGATCGACCACCGCAACAGCACCTCGACCGGCCACATCCTCACCATCGAGGAC
CCGATCGAGTTCCTGCACAAGCACAAGCAGTCCATCGTCAACCAGCGCGAAGTCGGCCTGGACACGCACGCCTTCCACAA
CGCGCTGAAGAACGCGATGCGTGAAGCACCGGACGTGATCCTGATCGGCGAGATCCTCGATGCCGAAACCATGGAAGCGG
CCATCGCCTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACTCCAACAATGCCGACCAGGCGATCGAGCGCATC
CTCAATTTCTTCCCGGAAAGCGCCCACAAGAACGTGCTGATGAACCTGTCCTTGAACCTGCGCGGGGTGATCTCGCAGCG
TCTGGTCAAGGGCAAGGACGGCCGTCGCCGCCCGGCAACCGAAGTTCTGCTCAACACGCCGATGATCCGCGACCTGCTGC
GCCGCGGTGAAGTGCACGCAATCAAGCAGGCGATGGAAGAGTCGTTGGAAGAAGGCATGCAGAGCTTCGACCAGTGCCTG
TTCCGGATGGCCAAGGACGGCATCATCGAGCAGGAGGAAGCGCTGCGCGCGGCCGACTCGCGCGACGGCCTGGCCTTGAA
GTTCCGCCTGTCCGAAGGCGGCACCGGTGAGCACGATCCGTATGCGGACTTCGCGGCATCGGCGCCGGCGGCGATCACGC
ACGGCTTCTGA
ATGGATATCGGCTATTTCTTGAAGCTGATGACCGAAAAGAACGCTTCGGACATGTTTTTGACCACCGGAGCGCCGGTTTA
CATCAAGATTGAAGGCAAGCTGTACCCGCTGGGCAATACCGGCCTGCCGCCGGGGATGGTCAAGAAAATCGCCTATTCGC
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGACCTGGAGCTCAACATGGCCATCGCCCTGGCCGACGCCGGGCGC
TTCCGCGTCAATGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTCATCCGTGCGATCAAGAGCCGCATTCCCAGCATCGA
GGAGCTCAACCTCCCGCAGGTGCTGAAGGACGTGATCATGACCCCGCGCGGGCTGGTACTGGTGGTCGGCTCGACCGGCT
CGGGCAAGTCGACCTCGCTGGCCTCGATGATCGACCACCGCAACAGCACCTCGACCGGCCACATCCTCACCATCGAGGAC
CCGATCGAGTTCCTGCACAAGCACAAGCAGTCCATCGTCAACCAGCGCGAAGTCGGCCTGGACACGCACGCCTTCCACAA
CGCGCTGAAGAACGCGATGCGTGAAGCACCGGACGTGATCCTGATCGGCGAGATCCTCGATGCCGAAACCATGGAAGCGG
CCATCGCCTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACTCCAACAATGCCGACCAGGCGATCGAGCGCATC
CTCAATTTCTTCCCGGAAAGCGCCCACAAGAACGTGCTGATGAACCTGTCCTTGAACCTGCGCGGGGTGATCTCGCAGCG
TCTGGTCAAGGGCAAGGACGGCCGTCGCCGCCCGGCAACCGAAGTTCTGCTCAACACGCCGATGATCCGCGACCTGCTGC
GCCGCGGTGAAGTGCACGCAATCAAGCAGGCGATGGAAGAGTCGTTGGAAGAAGGCATGCAGAGCTTCGACCAGTGCCTG
TTCCGGATGGCCAAGGACGGCATCATCGAGCAGGAGGAAGCGCTGCGCGCGGCCGACTCGCGCGACGGCCTGGCCTTGAA
GTTCCGCCTGTCCGAAGGCGGCACCGGTGAGCACGATCCGTATGCGGACTTCGCGGCATCGGCGCCGGCGGCGATCACGC
ACGGCTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
52.368 |
95.479 |
0.5 |
| pilU | Vibrio cholerae strain A1552 |
50.565 |
94.149 |
0.476 |
| pilU | Acinetobacter baylyi ADP1 |
50.282 |
94.149 |
0.473 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
46.512 |
91.489 |
0.426 |
| pilT | Pseudomonas aeruginosa PAK |
42.604 |
89.894 |
0.383 |
| pilT | Legionella pneumophila strain ERS1305867 |
41.124 |
89.894 |
0.37 |
| pilT | Legionella pneumophila strain Lp02 |
41.124 |
89.894 |
0.37 |
| pilT | Acinetobacter baylyi ADP1 |
40.882 |
90.426 |
0.37 |
| pilT | Acinetobacter baumannii strain A118 |
40.828 |
89.894 |
0.367 |
| pilT | Acinetobacter nosocomialis M2 |
40.828 |
89.894 |
0.367 |
| pilT | Acinetobacter baumannii D1279779 |
40.828 |
89.894 |
0.367 |
| pilT | Pseudomonas stutzeri DSM 10701 |
41.018 |
88.83 |
0.364 |
| pilT | Vibrio cholerae strain A1552 |
40.841 |
88.564 |
0.362 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.841 |
88.564 |
0.362 |
| pilT | Neisseria gonorrhoeae MS11 |
39.193 |
92.287 |
0.362 |
| pilT | Neisseria meningitidis 8013 |
39.193 |
92.287 |
0.362 |