Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Q5Z10_RS17035 Genome accession   NZ_CP130831
Coordinates   3713834..3714250 (-) Length   138 a.a.
NCBI ID   WP_303636558.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 704A1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3708834..3719250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5Z10_RS17025 pilB 3709828..3711555 (-) 1728 WP_303636556.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q5Z10_RS17030 - 3711620..3713734 (-) 2115 WP_303636557.1 sulfatase-like hydrolase/transferase -
  Q5Z10_RS17035 pilA 3713834..3714250 (-) 417 WP_303636558.1 pilin Machinery gene
  Q5Z10_RS17040 pilC 3714599..3715858 (+) 1260 WP_303639209.1 type II secretion system F family protein Machinery gene
  Q5Z10_RS17045 - 3715867..3716730 (+) 864 WP_049463888.1 A24 family peptidase -
  Q5Z10_RS17050 coaE 3716742..3717353 (+) 612 WP_303636559.1 dephospho-CoA kinase -
  Q5Z10_RS17055 - 3717388..3718758 (-) 1371 WP_303636560.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14108.11 Da        Isoelectric Point: 5.0644

>NTDB_id=861480 Q5Z10_RS17035 WP_303636558.1 3713834..3714250(-) (pilA) [Stenotrophomonas sp. 704A1]
MKNQKGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSEGAVLASGAKATVGENIANAGGVIDDTACNGVATFNTPTK
NTASLACAEGKITVTGTDAAKNVALDFTPTPASAGITWKCESTADNKYLPAECRSAAP

Nucleotide


Download         Length: 417 bp        

>NTDB_id=861480 Q5Z10_RS17035 WP_303636558.1 3713834..3714250(-) (pilA) [Stenotrophomonas sp. 704A1]
ATGAAGAACCAGAAGGGCTTCACCCTTATCGAACTGATGATCGTTGTTGCGATCATCGCCATCCTGGCCGCCATTGCACT
GCCGGCCTACCAGGACTACACCATCCGTTCGCGCGTCTCGGAAGGCGCCGTGCTGGCCTCGGGCGCCAAGGCCACCGTGG
GTGAGAACATCGCCAATGCCGGCGGCGTGATCGACGATACCGCCTGCAACGGCGTTGCCACCTTCAACACCCCGACCAAG
AACACCGCGAGCCTGGCCTGCGCCGAGGGCAAGATCACCGTCACCGGTACCGATGCCGCGAAGAACGTTGCGTTGGATTT
CACCCCGACCCCCGCCAGCGCTGGCATCACCTGGAAGTGCGAGTCGACCGCTGACAACAAGTACCTGCCGGCCGAATGCC
GCAGCGCTGCTCCGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-134)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

48.171

100

0.572
  comP Acinetobacter baylyi ADP1

52.74

100

0.558
  pilA2 Legionella pneumophila str. Paris

51.825

99.275

0.514
  pilA2 Legionella pneumophila strain ERS1305867

51.095

99.275

0.507
  pilA/pilA1 Eikenella corrodens VA1

41.615

100

0.486
  pilE Neisseria gonorrhoeae strain FA1090

39.61

100

0.442
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.844

100

0.428
  pilE Neisseria gonorrhoeae MS11

36.709

100

0.42
  pilA Acinetobacter baumannii strain A118

40.559

100

0.42
  pilA Pseudomonas aeruginosa PAK

37.838

100

0.406
  pilA Haemophilus influenzae 86-028NP

40.602

96.377

0.391
  pilA Haemophilus influenzae Rd KW20

39.706

98.551

0.391
  pilA Glaesserella parasuis strain SC1401

39.259

97.826

0.384
  pilA/pilAII Pseudomonas stutzeri DSM 10701

38.346

96.377

0.37