Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q5Z10_RS17040 Genome accession   NZ_CP130831
Coordinates   3714599..3715858 (+) Length   419 a.a.
NCBI ID   WP_303639209.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 704A1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3709599..3720858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5Z10_RS17025 pilB 3709828..3711555 (-) 1728 WP_303636556.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q5Z10_RS17030 - 3711620..3713734 (-) 2115 WP_303636557.1 sulfatase-like hydrolase/transferase -
  Q5Z10_RS17035 pilA 3713834..3714250 (-) 417 WP_303636558.1 pilin Machinery gene
  Q5Z10_RS17040 pilC 3714599..3715858 (+) 1260 WP_303639209.1 type II secretion system F family protein Machinery gene
  Q5Z10_RS17045 - 3715867..3716730 (+) 864 WP_049463888.1 A24 family peptidase -
  Q5Z10_RS17050 coaE 3716742..3717353 (+) 612 WP_303636559.1 dephospho-CoA kinase -
  Q5Z10_RS17055 - 3717388..3718758 (-) 1371 WP_303636560.1 HAMP domain-containing sensor histidine kinase -
  Q5Z10_RS17060 - 3718721..3719398 (-) 678 WP_025874286.1 response regulator transcription factor -
  Q5Z10_RS17065 - 3719406..3719882 (-) 477 WP_303636561.1 hypothetical protein -
  Q5Z10_RS17070 - 3719970..3720446 (-) 477 WP_303636562.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45714.20 Da        Isoelectric Point: 10.1488

>NTDB_id=861481 Q5Z10_RS17040 WP_303639209.1 3714599..3715858(+) (pilC) [Stenotrophomonas sp. 704A1]
MSVSRSAIKKEPVARATMELQAFVWVGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGAAGKAVGPKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDGIRTDIEGGSSLYEAVSKYPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIESLKGKIKKALFYPAMVVVVALLVSAIMLIFVVPQFEEVFQGFGAELPAFTQMIVNLSRFMVSWWWL
IAIVLIGAGVGFVMAYKRSPRMQHTMDRLILKVPVIGQIMNNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNVAMKQLNLFPHMVIQMTGIGEEAGALDTMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGVVV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=861481 Q5Z10_RS17040 WP_303639209.1 3714599..3715858(+) (pilC) [Stenotrophomonas sp. 704A1]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAACCGGTGGCGCGCGCCACCATGGAATTGCAGGCGTTTGTCTGGGTGGG
GACCGACAAGCGCGGCGTGAAGATGAAGGGCGAGCAGCTGGCGAAGAACGCCAACCTGCTGCGTGCCGAACTGCGCCGGC
AGGGCATCAATCCCGGCCAGGTCAAGCCCAAGCCCAAGCCGCTGTTCGGCGCGGCCGGCAAGGCCGTCGGCCCGAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACCATGATGAAGTCCGGCGTGCCGATCGTCTCGGCGCTGGAGATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTCGATGGCATCCGCACCGATATCGAGGGCGGTTCCTCGCTGTATGAGG
CGGTCAGCAAGTACCCGGTGCAGTTCGACGAGCTCTACCGCAATCTGGTCCGGGCCGGCGAAGGCGCGGGTGTACTGGAG
ACGGTGCTCGACACCGTTGCCACGTACAAGGAGAACATCGAATCGCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
CGCGATGGTGGTGGTGGTGGCCCTGCTGGTCAGCGCCATCATGCTGATCTTCGTGGTGCCGCAGTTCGAGGAAGTGTTCC
AGGGTTTCGGCGCCGAGCTGCCGGCCTTCACCCAGATGATCGTCAACCTGTCCCGCTTCATGGTCTCGTGGTGGTGGTTG
ATCGCGATCGTCCTGATCGGTGCCGGCGTCGGCTTCGTCATGGCCTACAAGCGCTCACCCAGGATGCAGCACACGATGGA
CCGATTGATCCTGAAGGTGCCGGTCATCGGGCAGATCATGAACAACAGCGCGATTGCCCGGTTCTCGCGGACCACCGCGG
TGACCTTCAAGGCCGGTGTGCCGCTGGTGGAGGCACTGGGCATCGTCGCCGGCGCCACCGGCAACAAGGTCTACGAGGAG
GCCGTGCTGCGCATGCGCGACGACGTGTCGGTCGGCTATCCGGTCAACGTGGCGATGAAGCAGCTCAACCTGTTCCCGCA
CATGGTGATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCCCTGGATACCATGCTGTTCAAGGTTGCCGAGTATTATG
AGCAGGAAGTCAACAATGCCGTGGATGCCCTGAGCAGCCTGCTCGAACCGATGATCATGGTCTTCATCGGCGTCGTCGTA
GGCGGTATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTGGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.217

96.897

0.506
  pilC Legionella pneumophila strain ERS1305867

52.632

95.227

0.501
  pilC Acinetobacter baylyi ADP1

50.985

96.897

0.494
  pilC Acinetobacter baumannii D1279779

50.369

97.136

0.489
  pilG Neisseria gonorrhoeae MS11

43.719

94.988

0.415
  pilC Vibrio cholerae strain A1552

42.365

96.897

0.411
  pilG Neisseria meningitidis 44/76-A

43.216

94.988

0.411
  pilC Vibrio campbellii strain DS40M4

41.895

95.704

0.401
  pilC Thermus thermophilus HB27

37.811

95.943

0.363