Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QWY21_RS07865 Genome accession   NZ_CP129236
Coordinates   1564863..1565903 (+) Length   346 a.a.
NCBI ID   WP_300988041.1    Uniprot ID   -
Organism   Planococcus sp. N022     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559863..1570903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY21_RS07850 (QWY21_07850) - 1560952..1561614 (+) 663 WP_300988038.1 hypothetical protein -
  QWY21_RS07855 (QWY21_07855) - 1561604..1563181 (+) 1578 WP_300988039.1 VanW family protein -
  QWY21_RS07860 (QWY21_07860) - 1563205..1564860 (+) 1656 WP_300988040.1 GspE/PulE family protein -
  QWY21_RS07865 (QWY21_07865) pilT 1564863..1565903 (+) 1041 WP_300988041.1 type IV pilus twitching motility protein PilT Machinery gene
  QWY21_RS07870 (QWY21_07870) - 1565905..1567116 (+) 1212 WP_300988042.1 type II secretion system F family protein -
  QWY21_RS07875 (QWY21_07875) - 1567252..1567725 (+) 474 WP_300988043.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QWY21_RS07880 (QWY21_07880) pilM 1567752..1568690 (+) 939 WP_300988044.1 pilus assembly protein PilM -
  QWY21_RS07885 (QWY21_07885) - 1568697..1569446 (+) 750 WP_300988045.1 fimbrial assembly protein -
  QWY21_RS07890 (QWY21_07890) - 1569443..1570411 (+) 969 WP_300988046.1 LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38312.15 Da        Isoelectric Point: 6.9157

>NTDB_id=851749 QWY21_RS07865 WP_300988041.1 1564863..1565903(+) (pilT) [Planococcus sp. N022]
MPTTFIDKVLTAARELNVSDIHMTTGIPPVFRMHGTLKQYGEEKLTPDITKEIGRVLMPESLWDTFLEKGEMDYSYSIPG
VARFRVNSFHQRGSISHAFRTIPTHIPTIEDLNMPDILKKLAETHQGLILVTGPTGSGKSTTLAAMIRYINENMTKHIIT
LEDPIEYMHKHGMSVIDQREVGFDTNSFANGLRAALRQDPDVILVGEMRDLETITTAITAAETGHLVMGTLHTSSAASTV
ERIIDVFPPEQHAQIRTQLGGILKGVISQRLLPTADGKGRVAATEIMIHNTAIANLIRTEKVHQIPNVILTNRAAGMHLM
STSVQELLKKGKITRQVAQPYLEGEE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=851749 QWY21_RS07865 WP_300988041.1 1564863..1565903(+) (pilT) [Planococcus sp. N022]
ATGCCAACAACTTTTATCGATAAAGTGCTGACAGCAGCACGGGAATTGAATGTCTCGGATATTCATATGACTACCGGCAT
TCCGCCGGTTTTCCGCATGCACGGCACGTTGAAGCAATACGGGGAAGAAAAATTGACGCCAGACATAACGAAAGAAATCG
GACGGGTCTTGATGCCGGAATCGCTGTGGGATACGTTTCTGGAAAAAGGCGAGATGGATTATTCTTATTCCATTCCCGGA
GTTGCACGGTTCCGTGTTAATTCGTTTCACCAGCGCGGTTCCATTTCGCATGCTTTTCGGACAATCCCGACACATATACC
GACCATAGAAGATTTAAATATGCCTGATATATTGAAGAAACTGGCCGAAACCCACCAAGGGTTAATCTTAGTGACCGGTC
CGACGGGTTCTGGGAAATCCACAACACTTGCAGCTATGATCCGCTACATAAACGAAAACATGACTAAACATATCATTACG
CTGGAAGATCCGATTGAATATATGCATAAACACGGCATGTCGGTCATCGACCAGCGCGAGGTCGGCTTTGATACGAATTC
ATTCGCCAACGGTTTGCGGGCGGCATTGCGCCAAGATCCCGACGTAATCCTGGTAGGGGAGATGCGCGACTTGGAGACGA
TCACGACAGCCATAACGGCCGCTGAAACGGGTCACTTGGTCATGGGGACGCTCCATACATCGAGTGCCGCTTCTACCGTA
GAACGGATCATTGATGTTTTCCCGCCAGAGCAGCATGCCCAAATCCGGACTCAGCTTGGAGGTATTTTAAAAGGCGTAAT
TTCGCAGCGTTTGTTGCCGACAGCAGACGGCAAAGGCCGTGTAGCCGCAACCGAAATCATGATTCACAATACGGCCATCG
CCAACTTGATCCGCACAGAAAAAGTGCACCAAATTCCAAACGTCATTTTGACGAACCGGGCAGCGGGCATGCACTTGATG
TCCACATCCGTACAAGAGCTCCTGAAAAAAGGGAAAATCACTCGCCAAGTAGCTCAGCCTTATTTAGAAGGAGAGGAATA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(117-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.704

97.688

0.486
  pilT Vibrio cholerae strain A1552

49.704

97.688

0.486
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.456

95.087

0.48
  pilT Neisseria meningitidis 8013

48.387

98.555

0.477
  pilT Neisseria gonorrhoeae MS11

47.801

98.555

0.471
  pilT Acinetobacter baumannii D1279779

48.503

96.532

0.468
  pilT Acinetobacter nosocomialis M2

48.503

96.532

0.468
  pilT Acinetobacter baumannii strain A118

48.503

96.532

0.468
  pilT Acinetobacter baylyi ADP1

47.507

98.555

0.468
  pilT Pseudomonas stutzeri DSM 10701

47.605

96.532

0.46
  pilT Pseudomonas aeruginosa PAK

47.305

96.532

0.457
  pilT Legionella pneumophila strain Lp02

48.607

93.353

0.454
  pilT Legionella pneumophila strain ERS1305867

48.607

93.353

0.454
  pilU Pseudomonas stutzeri DSM 10701

42.342

96.243

0.408
  pilU Vibrio cholerae strain A1552

40.12

96.532

0.387
  pilU Acinetobacter baylyi ADP1

39.308

91.908

0.361