Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   V6S41_RS04855 Genome accession   NZ_CP145655
Coordinates   981944..982924 (+) Length   326 a.a.
NCBI ID   WP_001546096.1    Uniprot ID   -
Organism   Escherichia coli strain S1-IND-01-B     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 976944..987924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S41_RS04825 (V6S41_04825) yggM 977545..978552 (+) 1008 WP_000745201.1 DUF1202 family protein -
  V6S41_RS04830 (V6S41_04830) hemW 978621..979757 (-) 1137 WP_000239978.1 radical SAM family heme chaperone HemW -
  V6S41_RS04835 (V6S41_04835) rdgB 979750..980343 (-) 594 WP_001174747.1 XTP/dITP diphosphatase -
  V6S41_RS04840 (V6S41_04840) yggU 980351..980641 (-) 291 WP_001277222.1 DUF167 family protein YggU -
  V6S41_RS04845 (V6S41_04845) yggT 980638..981204 (-) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  V6S41_RS04850 (V6S41_04850) yggS 981222..981926 (-) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  V6S41_RS04855 (V6S41_04855) pilT 981944..982924 (+) 981 WP_001546096.1 type IV pilus twitching motility protein PilT Machinery gene
  V6S41_RS04860 (V6S41_04860) ruvX 983103..983519 (-) 417 WP_000017111.1 Holliday junction resolvase RuvX -
  V6S41_RS04865 (V6S41_04865) yqgE 983519..984082 (-) 564 WP_001355636.1 YqgE/AlgH family protein -
  V6S41_RS04870 (V6S41_04870) gshB 984191..985141 (-) 951 WP_000593260.1 glutathione synthase -
  V6S41_RS04875 (V6S41_04875) rsmE 985154..985885 (-) 732 WP_001531929.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  V6S41_RS04880 (V6S41_04880) endA 985965..986672 (-) 708 WP_001305312.1 deoxyribonuclease I -
  V6S41_RS04885 (V6S41_04885) yggI 986767..987264 (-) 498 WP_000858396.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35944.14 Da        Isoelectric Point: 5.7980

>NTDB_id=851592 V6S41_RS04855 WP_001546096.1 981944..982924(+) (pilT) [Escherichia coli strain S1-IND-01-B]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLVNTPAVGNLIREGKTHQLLHVIQTGQQVGMLTFQQSYQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=851592 V6S41_RS04855 WP_001546096.1 981944..982924(+) (pilT) [Escherichia coli strain S1-IND-01-B]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGCATTCGCGGCAGAATGGAAGCTGCGCCGTTTGACGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGGTTGCGTGGC
AGTGCGTTCGCGCAACGGCAAGGTATTTCTCTGGCATTACGGTTGTTACCTTCGCACTGTCCACAGCTCGAACAGCTTGG
TGCGCCACCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTTGAA
TATCTCTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAAATTGGTTTGCACTGTATGACGTTCGCATCGGGATTGCG
GGCCGCATTGCGGGAAGATCCCGATGTGATTTTGCTCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCGCTGACGG
CAGCAGAAACCGGACACCTGGTGCTGGCAACTTTACATACGCGTGGTGCGGCGCAGGCAGTTGAGCGGCTGGTGGATTCA
TTTCCGGCGCAGGAAAAAGATCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCGGTGTTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTGCTGGTTAACACACCCGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTACTGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGTTAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGACGTTTGTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Neisseria meningitidis 8013

48.476

100

0.488
  pilT Neisseria gonorrhoeae MS11

48.171

100

0.485
  pilT Acinetobacter baylyi ADP1

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.177

100

0.463
  pilT Acinetobacter baumannii D1279779

46.177

100

0.463
  pilT Acinetobacter nosocomialis M2

46.177

100

0.463
  pilT Pseudomonas stutzeri DSM 10701

46.177

100

0.463
  pilT Pseudomonas aeruginosa PAK

45.872

100

0.46
  pilT Legionella pneumophila strain ERS1305867

45.26

100

0.454
  pilT Legionella pneumophila strain Lp02

45.26

100

0.454
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

40.694

97.239

0.396
  pilU Pseudomonas stutzeri DSM 10701

37.273

100

0.377
  pilB Legionella pneumophila strain ERS1305867

31.152

100

0.365