Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   TBR22_RS22770 Genome accession   NZ_AP024452
Coordinates   5507851..5508999 (-) Length   382 a.a.
NCBI ID   WP_305068750.1    Uniprot ID   A0A915UFI3
Organism   Luteitalea sp. TBR-22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5502851..5513999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TBR22_RS22750 (TBR22_45360) - 5503303..5503827 (+) 525 WP_239490132.1 peptidylprolyl isomerase -
  TBR22_RS22755 (TBR22_45370) - 5503870..5505396 (-) 1527 WP_239490133.1 response regulator -
  TBR22_RS22760 (TBR22_45380) - 5505402..5507003 (-) 1602 WP_239490134.1 hypothetical protein -
  TBR22_RS22765 (TBR22_45390) - 5507000..5507770 (-) 771 WP_239490135.1 ABC transporter ATP-binding protein -
  TBR22_RS22770 (TBR22_45400) pilT 5507851..5508999 (-) 1149 WP_305068750.1 type IV pilus twitching motility protein PilT Machinery gene
  TBR22_RS22775 (TBR22_45410) - 5509208..5510212 (+) 1005 WP_239490136.1 hypothetical protein -
  TBR22_RS22780 (TBR22_45420) pdxH 5510290..5510865 (-) 576 WP_239490137.1 pyridoxamine 5'-phosphate oxidase -
  TBR22_RS22785 (TBR22_45430) - 5510954..5511430 (+) 477 WP_239490138.1 hypothetical protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 41942.62 Da        Isoelectric Point: 7.5132

>NTDB_id=85158 TBR22_RS22770 WP_305068750.1 5507851..5508999(-) (pilT) [Luteitalea sp. TBR-22]
MATPAAPPVVQEPPINRLFRLMVQTGASDLHLSVSVPPMVRKDGRMLPVEETAPRLTAEDIRRLLGPITPEKNRNEFERR
HDTDFAYEIPGLARFRANIFMDRKGMGAVFRVIPSQILTAEQLGLSPQLLQLCHLSKGLVLVTGPTGSGKSTTLCAMVDY
INRTRHDHVITIEDPIEFVHDNKSCLINQREVHTHTESFKDALRAALREDPDIVLVGEMRDLETVAIAIETAETGHLVFG
TLHTSTAASTVDRIIDQFPADRQSQIRVMLSESLKGVIAQTLCRKVGGGRVAALEVLIVNTAISNLIREGKTFQIASMMQ
VGKAQGMQTLNDALADLVKNKLVAPEEAYVKAVDKAGFEALLKRMAIDTKFLGPQPLPGKPA

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=85158 TBR22_RS22770 WP_305068750.1 5507851..5508999(-) (pilT) [Luteitalea sp. TBR-22]
ATGGCCACCCCCGCCGCCCCTCCCGTCGTCCAGGAACCCCCGATCAACCGCCTGTTCCGGCTGATGGTGCAGACGGGTGC
GTCGGACCTCCACCTGAGCGTGAGCGTGCCGCCCATGGTCCGCAAGGACGGGCGCATGCTGCCGGTGGAGGAGACCGCGC
CCCGGCTGACCGCCGAGGACATCCGCCGCCTGCTCGGGCCGATCACGCCCGAGAAGAACCGCAACGAGTTCGAGCGGCGC
CACGACACCGACTTCGCCTACGAGATCCCAGGGCTGGCGCGCTTCCGCGCCAACATCTTCATGGACCGGAAGGGCATGGG
CGCGGTGTTCCGCGTCATCCCCAGCCAGATCCTCACGGCGGAGCAGCTCGGGCTGTCGCCGCAACTGCTGCAGCTCTGCC
ACCTCAGCAAGGGCCTCGTGCTGGTCACGGGGCCGACCGGATCCGGCAAGTCGACGACGCTGTGCGCGATGGTGGACTAC
ATCAACCGCACCCGTCACGACCACGTGATCACGATCGAGGACCCGATCGAGTTCGTGCACGACAACAAGAGCTGCCTGAT
CAACCAGCGGGAGGTGCACACGCACACCGAGTCGTTCAAGGACGCGCTGCGGGCGGCCCTCCGCGAGGACCCCGACATCG
TGCTGGTGGGCGAGATGCGCGACCTCGAGACCGTGGCCATCGCGATCGAGACGGCCGAGACCGGCCACCTGGTGTTCGGC
ACGCTGCACACGAGCACGGCGGCGTCGACCGTCGACCGCATCATCGACCAGTTCCCTGCCGATCGCCAGAGCCAGATCCG
CGTGATGCTCAGCGAGTCGCTCAAGGGCGTCATCGCGCAGACGCTGTGCCGCAAGGTCGGCGGCGGTCGCGTGGCGGCGC
TCGAGGTCCTGATCGTCAACACCGCGATCAGCAACCTGATTCGCGAGGGCAAGACCTTCCAGATCGCCTCGATGATGCAG
GTGGGCAAGGCGCAGGGGATGCAGACGCTCAACGACGCGCTGGCCGACCTGGTGAAGAACAAGCTGGTGGCCCCCGAGGA
AGCGTACGTGAAGGCCGTCGACAAGGCCGGGTTCGAGGCGCTCCTCAAGCGCATGGCCATCGACACGAAGTTCCTCGGGC
CACAGCCGCTGCCAGGCAAGCCGGCGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(92-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

54.942

90.052

0.495
  pilT Acinetobacter baumannii strain A118

54.942

90.052

0.495
  pilT Acinetobacter nosocomialis M2

54.942

90.052

0.495
  pilT Pseudomonas aeruginosa PAK

55.03

88.482

0.487
  pilT Pseudomonas stutzeri DSM 10701

54.07

90.052

0.487
  pilT Acinetobacter baylyi ADP1

56.535

86.126

0.487
  pilT Legionella pneumophila strain ERS1305867

53.198

90.052

0.479
  pilT Legionella pneumophila strain Lp02

53.198

90.052

0.479
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

53.412

88.22

0.471
  pilT Vibrio cholerae strain A1552

53.412

88.22

0.471
  pilT Neisseria meningitidis 8013

51.765

89.005

0.461
  pilT Neisseria gonorrhoeae MS11

51.471

89.005

0.458
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.414

91.099

0.432
  pilU Pseudomonas stutzeri DSM 10701

40.857

91.623

0.374
  pilU Vibrio cholerae strain A1552

39.886

91.885

0.366
  pilU Acinetobacter baylyi ADP1

40.588

89.005

0.361

Multiple sequence alignment