Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QR721_RS10800 Genome accession   NZ_CP129113
Coordinates   2071173..2072213 (-) Length   346 a.a.
NCBI ID   WP_348026828.1    Uniprot ID   -
Organism   Aciduricibacillus chroicocephali strain 44XB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2066173..2077213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR721_RS10775 (QR721_10765) - 2066353..2066997 (-) 645 WP_348026818.1 hypothetical protein -
  QR721_RS10780 (QR721_10770) pilM 2066990..2067991 (-) 1002 WP_348026820.1 pilus assembly protein PilM -
  QR721_RS10785 (QR721_10775) - 2068309..2069010 (-) 702 WP_348026822.1 A24 family peptidase -
  QR721_RS10790 (QR721_10780) - 2069152..2069655 (-) 504 WP_348026824.1 type II secretion system protein -
  QR721_RS10795 (QR721_10785) - 2069956..2071173 (-) 1218 WP_348026826.1 type II secretion system F family protein -
  QR721_RS10800 (QR721_10790) pilT 2071173..2072213 (-) 1041 WP_348026828.1 type IV pilus twitching motility protein PilT Machinery gene
  QR721_RS10805 (QR721_10795) - 2072225..2073880 (-) 1656 WP_348026830.1 ATPase, T2SS/T4P/T4SS family -
  QR721_RS10810 (QR721_10800) - 2073882..2075564 (-) 1683 WP_348026832.1 G5 domain-containing protein -
  QR721_RS10815 (QR721_10805) - 2075843..2076559 (-) 717 WP_348026834.1 A24 family peptidase -
  QR721_RS10820 (QR721_10810) - 2076580..2077062 (-) 483 WP_348026836.1 hypothetical protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38295.04 Da        Isoelectric Point: 6.6966

>NTDB_id=850996 QR721_RS10800 WP_348026828.1 2071173..2072213(-) (pilT) [Aciduricibacillus chroicocephali strain 44XB]
MHDIDTLLRKAAEMGASDVHLTVGSTPVFRMDGKLSLIGDELLTEEDTIEMARHLLPQNEFRTFEEVGEVDASYHLQGAA
RYRLSIFRQKQNTTIVARIIPSHIPSIEDLKMPKVLEKIAMSPQGLFLVTGPTGSGKSTTLAAMIDFINKNTSKHIITLE
DPIEYTHSHKKSLVHQREIGFDTDSFANALRASLRQDPDIILVGEMRDLETISTAITAAETGHLVLATLHTNSAPQTIHR
IIDVFPPGQQEQIRIQLADVLAGVLSQRLFPKKDGAGRVAATELLIRNPSVANLIRNGKVSQITNVMQTSRALGMHTMQM
SIQELLQKSLVDLKLVEPYMARTGDN

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=850996 QR721_RS10800 WP_348026828.1 2071173..2072213(-) (pilT) [Aciduricibacillus chroicocephali strain 44XB]
ATGCATGATATCGATACTTTGCTCAGGAAAGCAGCAGAAATGGGAGCATCCGATGTACACCTGACAGTCGGTTCAACTCC
TGTATTCCGCATGGATGGCAAGCTCAGCCTTATTGGCGATGAATTGCTAACAGAGGAAGATACGATTGAAATGGCTCGCC
ATTTATTACCGCAAAATGAATTTCGTACTTTCGAGGAAGTGGGTGAGGTAGATGCTTCCTATCATCTGCAAGGAGCTGCC
CGCTATCGTCTGAGCATTTTCCGCCAGAAGCAGAATACAACGATTGTCGCGCGAATTATACCAAGCCATATCCCTTCCAT
TGAAGATTTGAAAATGCCGAAAGTGTTGGAAAAGATTGCGATGTCTCCGCAAGGACTTTTTCTTGTAACAGGTCCGACGG
GGTCGGGGAAATCAACGACACTCGCAGCAATGATTGATTTTATTAATAAAAATACTTCAAAGCATATCATCACATTGGAA
GATCCGATTGAATATACCCATTCTCATAAAAAGTCGCTCGTGCACCAGCGTGAAATAGGATTTGACACAGACAGTTTCGC
CAATGCTTTGCGGGCAAGTTTGCGTCAGGATCCGGATATCATTCTTGTCGGTGAAATGCGCGATCTTGAGACGATTTCAA
CAGCAATTACGGCAGCGGAAACAGGGCACCTCGTCCTTGCGACATTGCATACGAACAGTGCTCCGCAAACGATTCACCGG
ATTATTGATGTCTTTCCGCCGGGACAGCAAGAACAGATACGTATCCAGCTTGCTGATGTGCTCGCAGGTGTACTTTCCCA
GAGGCTCTTCCCTAAGAAAGACGGAGCAGGCAGGGTGGCAGCTACGGAACTTCTTATTCGAAATCCTTCCGTCGCCAACC
TGATTCGAAATGGCAAAGTGAGCCAGATTACGAATGTAATGCAGACGAGTCGTGCGCTCGGCATGCATACGATGCAGATG
TCGATACAGGAATTGCTCCAGAAAAGTCTCGTAGATCTTAAACTCGTAGAACCATACATGGCCAGGACAGGTGACAATTA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.28

95.087

0.497
  pilT Neisseria meningitidis 8013

49.558

97.977

0.486
  pilT Neisseria gonorrhoeae MS11

49.39

94.798

0.468
  pilT Acinetobacter baumannii D1279779

47.368

98.844

0.468
  pilT Acinetobacter nosocomialis M2

47.368

98.844

0.468
  pilT Acinetobacter baumannii strain A118

47.368

98.844

0.468
  pilT Pseudomonas stutzeri DSM 10701

48.936

95.087

0.465
  pilT Pseudomonas aeruginosa PAK

48.328

95.087

0.46
  pilT Acinetobacter baylyi ADP1

47.734

95.665

0.457
  pilT Vibrio cholerae strain A1552

46.866

96.821

0.454
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

46.866

96.821

0.454
  pilT Legionella pneumophila strain ERS1305867

47.416

95.087

0.451
  pilT Legionella pneumophila strain Lp02

47.416

95.087

0.451
  pilU Pseudomonas stutzeri DSM 10701

43.963

93.353

0.41
  pilU Vibrio cholerae strain A1552

41.304

93.064

0.384
  pilU Acinetobacter baylyi ADP1

40.123

93.642

0.376