Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | QQA12_RS04525 | Genome accession | NZ_CP128405 |
| Coordinates | 1013905..1014942 (+) | Length | 345 a.a. |
| NCBI ID | WP_104938226.1 | Uniprot ID | - |
| Organism | Stenotrophomonas sp. 17(2023) | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1008905..1019942
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQA12_RS04510 | - | 1009772..1010758 (+) | 987 | WP_233324909.1 | DUF4105 domain-containing protein | - |
| QQA12_RS04515 | - | 1010755..1012710 (+) | 1956 | WP_054663708.1 | alpha/beta fold hydrolase | - |
| QQA12_RS04520 | proC | 1012799..1013638 (-) | 840 | WP_226050203.1 | pyrroline-5-carboxylate reductase | - |
| QQA12_RS04525 | pilT | 1013905..1014942 (+) | 1038 | WP_104938226.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| QQA12_RS04530 | pilU | 1015075..1016205 (+) | 1131 | WP_054663718.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| QQA12_RS04535 | - | 1016870..1017418 (+) | 549 | WP_226050284.1 | DUF3617 family protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38581.23 Da Isoelectric Point: 6.7271
>NTDB_id=847271 QQA12_RS04525 WP_104938226.1 1013905..1014942(+) (pilT) [Stenotrophomonas sp. 17(2023)]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLACPPVFRQLIEQPQGLILVTGPTGSGKSTTLAAMVDHINKNEYGHILTVED
PIEFVHTPQKCLINQREVHRDTHGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRIASHEIMVATPAIRNLIREDKVAQMYSAIQTGQQAGMQTLDQNL
QDLVKRSLITRNQAREYAKDRRLFE
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLACPPVFRQLIEQPQGLILVTGPTGSGKSTTLAAMVDHINKNEYGHILTVED
PIEFVHTPQKCLINQREVHRDTHGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRIASHEIMVATPAIRNLIREDKVAQMYSAIQTGQQAGMQTLDQNL
QDLVKRSLITRNQAREYAKDRRLFE
Nucleotide
Download Length: 1038 bp
>NTDB_id=847271 QQA12_RS04525 WP_104938226.1 1013905..1014942(+) (pilT) [Stenotrophomonas sp. 17(2023)]
ATGGACATCGCTGAACTTCTGGCGTTCTCGGTCAAGAACAAGGCCTCGGACCTGCACCTGTCCGCCGGCCTGCCGCCGAT
GATCCGCGTCGACGGCGACGTGCGCCGCATCAACATCCCGGCACTGGACCACAAGCAGGTCCATGCCCTGGTGTACGACA
TCATGTCGGACAAGCAGCGCCGCGATTACGAGGAATTCCTCGAGGTCGACTTCTCCTTCGAGATTCCCTCGCTGGCGCGC
TTCCGTGTCAACGCGTTCAACCAGAACCGCGGTGCCGGTGCGGTGTTCCGCACCATTCCCTCCGAAGTCCTGACCCTGGA
GGACCTGGCGTGCCCGCCGGTGTTCCGCCAGCTGATCGAGCAGCCGCAGGGACTGATCCTGGTCACCGGCCCGACCGGTT
CGGGCAAGTCGACCACGCTGGCGGCGATGGTGGACCACATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAT
CCGATCGAATTCGTGCACACCCCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGACACCCACGGCTTCAACGA
GGCGCTGCGCTCGGCGCTGCGCGAGGACCCGGACTACATCCTGGTGGGCGAACTGCGTGACCTGGAAACCATCCGCCTGG
CGCTGACCGCCGCGGAGACCGGCCACCTGGTGTTCGGCACCCTGCATACCAGTTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAGAAGCCGATGGTGCGCTCGATGCTGTCCGAATCGCTGCGCGCGGTGATCTCGCAGGC
GCTGCTGAAGAAGGTCGGCGGTGGCCGCATCGCCTCGCACGAGATCATGGTGGCCACGCCGGCGATCCGGAACCTGATCC
GCGAGGACAAGGTCGCGCAGATGTATTCGGCCATCCAGACCGGCCAGCAGGCGGGCATGCAGACCCTCGACCAGAACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACCCGCAACCAGGCCCGCGAATACGCCAAGGACCGGCGCCTGTTCGAATAA
ATGGACATCGCTGAACTTCTGGCGTTCTCGGTCAAGAACAAGGCCTCGGACCTGCACCTGTCCGCCGGCCTGCCGCCGAT
GATCCGCGTCGACGGCGACGTGCGCCGCATCAACATCCCGGCACTGGACCACAAGCAGGTCCATGCCCTGGTGTACGACA
TCATGTCGGACAAGCAGCGCCGCGATTACGAGGAATTCCTCGAGGTCGACTTCTCCTTCGAGATTCCCTCGCTGGCGCGC
TTCCGTGTCAACGCGTTCAACCAGAACCGCGGTGCCGGTGCGGTGTTCCGCACCATTCCCTCCGAAGTCCTGACCCTGGA
GGACCTGGCGTGCCCGCCGGTGTTCCGCCAGCTGATCGAGCAGCCGCAGGGACTGATCCTGGTCACCGGCCCGACCGGTT
CGGGCAAGTCGACCACGCTGGCGGCGATGGTGGACCACATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAT
CCGATCGAATTCGTGCACACCCCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGACACCCACGGCTTCAACGA
GGCGCTGCGCTCGGCGCTGCGCGAGGACCCGGACTACATCCTGGTGGGCGAACTGCGTGACCTGGAAACCATCCGCCTGG
CGCTGACCGCCGCGGAGACCGGCCACCTGGTGTTCGGCACCCTGCATACCAGTTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAGAAGCCGATGGTGCGCTCGATGCTGTCCGAATCGCTGCGCGCGGTGATCTCGCAGGC
GCTGCTGAAGAAGGTCGGCGGTGGCCGCATCGCCTCGCACGAGATCATGGTGGCCACGCCGGCGATCCGGAACCTGATCC
GCGAGGACAAGGTCGCGCAGATGTATTCGGCCATCCAGACCGGCCAGCAGGCGGGCATGCAGACCCTCGACCAGAACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACCCGCAACCAGGCCCGCGAATACGCCAAGGACCGGCGCCTGTTCGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter nosocomialis M2 |
78.488 |
99.71 |
0.783 |
| pilT | Acinetobacter baumannii D1279779 |
78.488 |
99.71 |
0.783 |
| pilT | Acinetobacter baumannii strain A118 |
78.488 |
99.71 |
0.783 |
| pilT | Pseudomonas stutzeri DSM 10701 |
78.761 |
98.261 |
0.774 |
| pilT | Acinetobacter baylyi ADP1 |
77.326 |
99.71 |
0.771 |
| pilT | Pseudomonas aeruginosa PAK |
78.171 |
98.261 |
0.768 |
| pilT | Legionella pneumophila strain Lp02 |
72.965 |
99.71 |
0.728 |
| pilT | Legionella pneumophila strain ERS1305867 |
72.965 |
99.71 |
0.728 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
72.036 |
95.362 |
0.687 |
| pilT | Vibrio cholerae strain A1552 |
72.036 |
95.362 |
0.687 |
| pilT | Neisseria meningitidis 8013 |
66.276 |
98.841 |
0.655 |
| pilT | Neisseria gonorrhoeae MS11 |
65.982 |
98.841 |
0.652 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.565 |
100 |
0.496 |
| pilU | Vibrio cholerae strain A1552 |
40.517 |
100 |
0.409 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.708 |
98.261 |
0.4 |
| pilU | Acinetobacter baylyi ADP1 |
39.706 |
98.551 |
0.391 |