Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   QN060_RS18980 Genome accession   NZ_CP127225
Coordinates   4158206..4159339 (+) Length   377 a.a.
NCBI ID   WP_053503915.1    Uniprot ID   A0AAJ6GWY8
Organism   Xanthomonas oryzae pv. leersiae strain YNJC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4153206..4164339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN060_RS18955 (QN060_18950) - 4153379..4154575 (-) 1197 WP_285956736.1 cystathionine gamma-synthase -
  QN060_RS18960 (QN060_18955) - 4154666..4156036 (-) 1371 WP_053503913.1 pyridoxal-phosphate dependent enzyme -
  QN060_RS18965 (QN060_18960) - 4156277..4156495 (-) 219 WP_003484103.1 YdcH family protein -
  QN060_RS18970 (QN060_18965) - 4156837..4157727 (-) 891 WP_285956737.1 hypothetical protein -
  QN060_RS18975 (QN060_18970) - 4157724..4158107 (-) 384 WP_033003790.1 DUF4398 domain-containing protein -
  QN060_RS18980 (QN060_18975) pilU 4158206..4159339 (+) 1134 WP_053503915.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  QN060_RS18985 (QN060_18980) - 4159336..4159596 (-) 261 WP_053503916.1 hypothetical protein -
  QN060_RS18990 (QN060_18985) maiA 4159679..4160341 (-) 663 WP_053503917.1 maleylacetoacetate isomerase -
  QN060_RS18995 (QN060_18990) - 4160385..4161443 (-) 1059 WP_207306722.1 fumarylacetoacetate hydrolase family protein -
  QN060_RS19000 (QN060_18995) - 4161752..4163137 (+) 1386 WP_131074543.1 DEAD/DEAH box helicase -
  QN060_RS19005 (QN060_19000) queD 4163553..4163906 (+) 354 WP_008576903.1 6-carboxytetrahydropterin synthase QueD -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 41824.25 Da        Isoelectric Point: 6.2391

>NTDB_id=842866 QN060_RS18980 WP_053503915.1 4158206..4159339(+) (pilU) [Xanthomonas oryzae pv. leersiae strain YNJC]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALPDAGR
FRVNVFKQRGEVGMVIRAIRSRIPSIEELHLPQVLKDIIMTPRGLVLVVGSTGSGKSTSLAAMIDHRNGTTTGHILTIED
PIEYLHKHKMSIVNQREVGLDTHAFQSALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLALNLRAVISQRLVKGLDGRRRPATEVLLNTPMIRDLLRRGQVHEVKQAMEESLEEGMQTFDQCL
FRMVKSGEIEQEEALRAADSRDGLALKFRLSEGGSGEHDPYADYETPAAPKISHGFL

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=842866 QN060_RS18980 WP_053503915.1 4158206..4159339(+) (pilU) [Xanthomonas oryzae pv. leersiae strain YNJC]
ATGGATATCGGCTACTTCTTGAAGCTGATGACCGAAAAGAATGCTTCGGACATGTTCTTGACCACCGGCGCGCCGGTGTA
CATCAAGATCGAAGGCAAGCTTTACCCGCTCGGCAATACGGGATTGCCACCGGGGATGGTCAAGAAAATCGCTTACTCAT
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGAGCTCGAACTCAACATGGCCATCGCCCTGCCCGACGCCGGCCGC
TTCCGCGTGAACGTGTTCAAACAGCGCGGCGAGGTAGGCATGGTGATCCGTGCCATTCGCAGCCGGATCCCCAGCATCGA
AGAGCTCCACCTGCCACAGGTGCTCAAGGACATCATCATGACCCCGCGCGGGCTGGTGCTGGTGGTGGGCTCGACCGGCT
CGGGCAAGTCGACCTCGCTTGCCGCGATGATCGACCACCGCAACGGCACCACCACCGGGCACATCCTCACCATCGAGGAC
CCGATCGAATATCTGCACAAGCACAAGATGTCGATCGTGAACCAGCGCGAGGTGGGCCTGGATACCCATGCTTTCCAGAG
CGCGCTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCCTGATCGGCGAGATCCTGGACGCCGAGACCATGGAGGCAG
CGATCGCCTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACTCCAACAATGCCGACCAGACCATCGAGCGTATC
CTCAATTTCTTCCCGGAAAGCGCGCACAAGAACGTGCTGATGAACCTGGCGCTCAACCTGCGCGCGGTCATCTCCCAGCG
TCTGGTCAAGGGCCTGGACGGCCGTCGCCGCCCGGCCACCGAAGTGTTGCTCAATACGCCGATGATCCGCGACCTGCTAC
GCCGCGGCCAGGTGCACGAGGTCAAGCAGGCGATGGAAGAGTCGCTGGAAGAAGGCATGCAGACCTTCGACCAGTGCCTG
TTCCGCATGGTGAAGTCGGGCGAAATCGAGCAGGAAGAAGCGCTGCGTGCCGCCGACTCGCGCGATGGCCTGGCGCTGAA
GTTCCGTCTCTCCGAAGGCGGCTCCGGCGAGCACGACCCGTACGCGGATTACGAAACGCCGGCTGCGCCGAAGATCAGCC
ACGGGTTTCTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(92-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

52.368

95.225

0.499
  pilU Vibrio cholerae strain A1552

49.722

95.491

0.475
  pilU Acinetobacter baylyi ADP1

49.718

93.899

0.467
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.455

99.204

0.451
  pilT Pseudomonas aeruginosa PAK

43.195

89.655

0.387
  pilT Acinetobacter baumannii strain A118

42.308

89.655

0.379
  pilT Acinetobacter nosocomialis M2

42.308

89.655

0.379
  pilT Acinetobacter baumannii D1279779

42.308

89.655

0.379
  pilT Acinetobacter baylyi ADP1

41.765

90.186

0.377
  pilT Pseudomonas stutzeri DSM 10701

42.012

89.655

0.377
  pilT Neisseria meningitidis 8013

40.058

92.042

0.369
  pilT Neisseria gonorrhoeae MS11

40.058

92.042

0.369
  pilT Vibrio cholerae strain A1552

41.742

88.329

0.369
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.742

88.329

0.369
  pilT Legionella pneumophila strain ERS1305867

41.124

89.655

0.369
  pilT Legionella pneumophila strain Lp02

41.124

89.655

0.369