Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   QN242_RS18310 Genome accession   NZ_CP126173
Coordinates   4320351..4321487 (+) Length   378 a.a.
NCBI ID   WP_160968863.1    Uniprot ID   -
Organism   Xanthomonas rydalmerensis strain DAR34882     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4315351..4326487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN242_RS18285 (QN242_18285) - 4315578..4316777 (-) 1200 WP_317843832.1 cystathionine gamma-synthase -
  QN242_RS18290 (QN242_18290) - 4316864..4318234 (-) 1371 WP_010340227.1 pyridoxal-phosphate dependent enzyme -
  QN242_RS18295 (QN242_18295) - 4318415..4318633 (-) 219 WP_010340228.1 YdcH family protein -
  QN242_RS18300 (QN242_18300) - 4318969..4319841 (-) 873 WP_317845399.1 hypothetical protein -
  QN242_RS18305 (QN242_18305) - 4319859..4320251 (-) 393 WP_048491628.1 DUF4398 domain-containing protein -
  QN242_RS18310 (QN242_18310) pilU 4320351..4321487 (+) 1137 WP_160968863.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  QN242_RS18315 (QN242_18315) maiA 4321954..4322610 (-) 657 WP_184448452.1 maleylacetoacetate isomerase -
  QN242_RS18320 (QN242_18320) - 4322700..4323689 (-) 990 WP_317843833.1 fumarylacetoacetate hydrolase family protein -
  QN242_RS18325 (QN242_18325) - 4324035..4325351 (+) 1317 Protein_3600 DEAD/DEAH box helicase -
  QN242_RS18330 (QN242_18330) queD 4325600..4325959 (+) 360 WP_017916250.1 6-carboxytetrahydropterin synthase QueD -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42021.29 Da        Isoelectric Point: 6.2384

>NTDB_id=837100 QN242_RS18310 WP_160968863.1 4320351..4321487(+) (pilU) [Xanthomonas rydalmerensis strain DAR34882]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGATGLPPGMVKKIAYSLMDEGQVPQFERDLELNMAIALQDAGR
FRVNVFKQRGEVGMVIRAIRSKIPSIEELHLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDYRNSTTTGHILTIED
PIEYLHKHKLSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPENAHKNVLMNLSLNLRAVISQRLVKDSSGRRRPASEVLLNTPMIRDLLRRGQVHEIKQAMEESLEEGMETFDQCL
FRMVKQGQIEQEEALRAADSRDGLALKFRLSEGGSGEHDPYADYDSPSAAPRITHGFV

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=837100 QN242_RS18310 WP_160968863.1 4320351..4321487(+) (pilU) [Xanthomonas rydalmerensis strain DAR34882]
ATGGATATCGGCTATTTCCTGAAGCTGATGACCGAAAAGAACGCCTCGGACATGTTCCTGACCACGGGAGCACCGGTCTA
TATCAAGATCGAAGGCAAGCTGTACCCGCTCGGCGCCACCGGCCTGCCGCCGGGCATGGTCAAGAAGATCGCCTACTCGC
TGATGGACGAAGGCCAGGTGCCGCAGTTCGAGCGGGACCTGGAATTGAACATGGCCATCGCCCTGCAGGACGCCGGACGT
TTTCGCGTCAACGTGTTCAAGCAGCGCGGCGAGGTCGGCATGGTGATCCGCGCGATCCGCAGCAAGATCCCCAGCATCGA
AGAGCTGCACCTGCCACAGGTGCTCAAGGACGTGATCATGACCCCGCGCGGGCTGGTCCTGGTGGTCGGCTCGACCGGCT
CGGGCAAGTCCACCTCGCTGGCGTCGATGATCGACTACCGCAACAGCACCACCACCGGGCACATCCTCACCATCGAGGAC
CCAATCGAATACCTGCACAAGCACAAGCTGTCCATCGTCAACCAGCGCGAGGTCGGGCTGGACACCCACGCCTTCCACAA
CGCACTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCCTGATCGGCGAGATCCTGGACGCGGAGACCATGGAGGCGG
CCATCGCCTTCGCCGAGACCGGGCACCTGTGCCTGGCCACTCTCCACTCCAACAATGCCGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCCGAGAACGCGCACAAGAACGTGCTGATGAACCTGTCGCTGAACCTGCGCGCGGTGATTTCGCAGCG
CCTGGTCAAGGACAGCAGCGGCCGCCGCCGGCCGGCCTCGGAAGTGCTGCTGAACACGCCGATGATCCGCGACCTGCTGC
GCCGCGGCCAGGTCCACGAGATCAAGCAGGCGATGGAGGAGTCGCTGGAGGAAGGCATGGAAACCTTCGATCAGTGCCTG
TTCCGCATGGTCAAGCAGGGCCAGATCGAGCAGGAGGAAGCGCTGCGCGCGGCCGACTCGCGCGACGGCCTGGCCCTGAA
GTTCCGCCTGTCCGAAGGCGGCAGCGGCGAGCACGACCCCTATGCCGACTACGACAGCCCCAGCGCCGCGCCGCGGATCA
CCCACGGGTTCGTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(69-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

52.089

94.974

0.495
  pilU Vibrio cholerae strain A1552

49.722

95.238

0.474
  pilU Acinetobacter baylyi ADP1

50

93.651

0.468
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.297

99.735

0.442
  pilT Pseudomonas aeruginosa PAK

43.491

89.418

0.389
  pilT Acinetobacter baumannii D1279779

42.308

89.418

0.378
  pilT Acinetobacter nosocomialis M2

42.308

89.418

0.378
  pilT Acinetobacter baumannii strain A118

42.308

89.418

0.378
  pilT Acinetobacter baylyi ADP1

41.471

89.947

0.373
  pilT Pseudomonas stutzeri DSM 10701

41.716

89.418

0.373
  pilT Neisseria meningitidis 8013

40.346

91.799

0.37
  pilT Neisseria gonorrhoeae MS11

40.346

91.799

0.37
  pilT Legionella pneumophila strain Lp02

41.42

89.418

0.37
  pilT Legionella pneumophila strain ERS1305867

41.42

89.418

0.37
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.141

88.095

0.362
  pilT Vibrio cholerae strain A1552

41.141

88.095

0.362