Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   U4X40_RS04345 Genome accession   NZ_CP140519
Coordinates   833051..834031 (+) Length   326 a.a.
NCBI ID   WP_001055622.1    Uniprot ID   -
Organism   Escherichia coli strain PNUSAE151637     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 828051..839031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4X40_RS04315 (U4X40_04320) yggM 828478..829485 (+) 1008 WP_000745245.1 DUF1202 family protein -
  U4X40_RS04320 (U4X40_04325) hemW 829728..830864 (-) 1137 WP_000239959.1 radical SAM family heme chaperone HemW -
  U4X40_RS04325 (U4X40_04330) rdgB 830857..831450 (-) 594 WP_001174761.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  U4X40_RS04330 (U4X40_04335) yggU 831458..831748 (-) 291 WP_001277224.1 DUF167 family protein YggU -
  U4X40_RS04335 (U4X40_04340) yggT 831745..832311 (-) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  U4X40_RS04340 (U4X40_04345) yggS 832329..833033 (-) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  U4X40_RS04345 (U4X40_04350) pilT 833051..834031 (+) 981 WP_001055622.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  U4X40_RS04350 (U4X40_04355) ruvX 834222..834638 (-) 417 WP_000017110.1 Holliday junction resolvase RuvX -
  U4X40_RS04355 (U4X40_04360) yqgE 834638..835201 (-) 564 WP_001053178.1 YqgE/AlgH family protein -
  U4X40_RS04360 (U4X40_04365) gshB 835313..836260 (-) 948 WP_000593272.1 glutathione synthase -
  U4X40_RS04365 (U4X40_04370) rsmE 836273..837004 (-) 732 WP_001222509.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  U4X40_RS04370 (U4X40_04375) endA 837084..837791 (-) 708 WP_000286494.1 deoxyribonuclease I -
  U4X40_RS04375 (U4X40_04380) yggI 837886..838383 (-) 498 WP_001303653.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35982.18 Da        Isoelectric Point: 5.7654

>NTDB_id=835441 U4X40_RS04345 WP_001055622.1 833051..834031(+) (pilT) [Escherichia coli strain PNUSAE151637]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLTENQRLRG
SAFAQRHGISLALRLLPSHCPQLEQLGTPPILPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=835441 U4X40_RS04345 WP_001055622.1 833051..834031(+) (pilT) [Escherichia coli strain PNUSAE151637]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGCATTCGCGGGCTAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCCGTGTCGCTGACGGAAAACCAGCGATTGCGTGGC
AGCGCATTCGCGCAACGGCATGGCATTTCGCTGGCGTTACGGCTGTTACCTTCGCACTGCCCGCAGCTCGAACAGCTTGG
CACACCACCGATATTGCCGGAGTTACTCAAGAGCGAGAATGGCTTGATTCTGGTGACGGGGGCGACGGGGAGTGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGTTATCTCAATCAACATGCTGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAAATCGGTTTGCATTGTATGACGTTCGCATCGGGATTGCG
GGCCGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGGCATCTGGTGCTGGCAACCTTACATACACGTGGTGCCGCGCAGGCAGTTGAGCGACTTGTGGATTCA
TTTCCGGCGCAGGAAAAAGACCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCAGTGCTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTATTTGAATTGCTGATTAACACACCTGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACTGGGCAACAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGGCGTTTGTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(61-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Neisseria meningitidis 8013

48.78

100

0.491
  pilT Neisseria gonorrhoeae MS11

48.476

100

0.488
  pilT Acinetobacter baumannii strain A118

46.789

100

0.469
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Acinetobacter baumannii D1279779

46.789

100

0.469
  pilT Acinetobacter nosocomialis M2

46.789

100

0.469
  pilT Pseudomonas stutzeri DSM 10701

46.177

100

0.463
  pilT Pseudomonas aeruginosa PAK

45.566

100

0.457
  pilT Legionella pneumophila strain Lp02

45.26

100

0.454
  pilT Legionella pneumophila strain ERS1305867

45.26

100

0.454
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

40.379

97.239

0.393
  pilU Pseudomonas stutzeri DSM 10701

37.273

100

0.377
  pilU Acinetobacter baylyi ADP1

37.654

99.387

0.374