Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   QIF44_RS05450 Genome accession   NZ_CP124546
Coordinates   1209107..1210234 (-) Length   375 a.a.
NCBI ID   WP_025878450.1    Uniprot ID   A0A1W1H1T2
Organism   Stenotrophomonas indicatrix strain MGMM10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1204107..1215234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIF44_RS05430 (QIF44_05430) - 1204507..1205496 (+) 990 WP_025878446.1 fumarylacetoacetate hydrolase family protein -
  QIF44_RS05435 (QIF44_05435) maiA 1205511..1206179 (+) 669 WP_282280414.1 maleylacetoacetate isomerase -
  QIF44_RS05440 (QIF44_05440) - 1206213..1207712 (-) 1500 WP_282280415.1 UdgX family uracil-DNA binding protein -
  QIF44_RS05445 (QIF44_05445) - 1207693..1208976 (-) 1284 WP_279208424.1 putative DNA modification/repair radical SAM protein -
  QIF44_RS05450 (QIF44_05450) pilU 1209107..1210234 (-) 1128 WP_025878450.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  QIF44_RS05455 (QIF44_05455) - 1210356..1210721 (+) 366 WP_025878451.1 DUF4398 domain-containing protein -
  QIF44_RS05460 (QIF44_05460) - 1210718..1211602 (+) 885 WP_025878452.1 OmpA family protein -
  QIF44_RS05465 (QIF44_05465) - 1211926..1212162 (+) 237 WP_025878453.1 YdcH family protein -
  QIF44_RS05470 (QIF44_05470) - 1212515..1213885 (+) 1371 WP_025878454.1 pyridoxal-phosphate dependent enzyme -
  QIF44_RS05475 (QIF44_05475) - 1214009..1215184 (+) 1176 WP_282280417.1 cystathionine gamma-synthase -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 41371.63 Da        Isoelectric Point: 6.3738

>NTDB_id=826392 QIF44_RS05450 WP_025878450.1 1209107..1210234(-) (pilU) [Stenotrophomonas indicatrix strain MGMM10]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALADAGR
FRVNVFKQRGEVGMVIRAIRSRIPSIEELNLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTTTGHILTIED
PIEYLHKHKMSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLALNLRAVISQRLVKNKEGRRLPATEVLINTPMIRDLLRRGQVHEIKAAMEASLEEGMESFDQCL
FRLAKNGTIDQEEALRAADSRDGLALKFRLSEGGSGEHDPYADFSAGAPSITHGF

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=826392 QIF44_RS05450 WP_025878450.1 1209107..1210234(-) (pilU) [Stenotrophomonas indicatrix strain MGMM10]
ATGGATATCGGCTACTTCCTGAAGCTGATGACCGAAAAGAACGCTTCGGACATGTTCTTGACCACCGGCGCGCCGGTGTA
CATCAAGATCGAGGGCAAGCTGTATCCGCTCGGCAATACCGGCCTGCCGCCGGGAATGGTGAAGAAGATCGCCTACTCGC
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGAGCTGGAACTCAACATGGCCATCGCCCTGGCCGATGCCGGGCGT
TTCCGCGTCAACGTGTTCAAGCAGCGCGGTGAAGTGGGCATGGTCATCCGCGCCATCCGCAGCCGGATTCCGAGCATCGA
AGAGCTCAACCTGCCGCAGGTGCTGAAAGACGTCATCATGACCCCGCGTGGGCTGGTGCTGGTGGTGGGGTCCACCGGCT
CGGGCAAGTCCACCTCGCTGGCGTCGATGATCGACCATCGCAACAGCACCACCACCGGTCACATCCTCACCATCGAGGAC
CCGATCGAGTACCTGCACAAGCACAAGATGTCCATCGTCAACCAGCGCGAGGTCGGGCTCGATACCCATGCCTTCCACAA
TGCGCTGAAGAACGCGATGCGTGAAGCGCCGGACGTGATCCTGATCGGCGAGATCCTGGATGCCGAAACGATGGAGGCGG
CGATCGCCTTCGCCGAAACCGGGCACCTGTGCCTGGCCACCCTGCACTCCAACAACGCCGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCGGAAAGCGCGCACAAGAACGTGCTGATGAACCTGGCGCTGAACCTGCGTGCGGTGATCAGCCAGCG
CCTGGTGAAAAACAAGGAGGGGCGCCGCCTGCCGGCCACCGAAGTACTGATCAACACGCCGATGATCCGCGACCTGCTGC
GTCGCGGCCAGGTACACGAGATCAAGGCGGCGATGGAGGCTTCGCTGGAAGAAGGCATGGAGAGCTTCGACCAGTGCCTG
TTCCGGTTGGCCAAGAACGGCACCATCGATCAGGAAGAAGCCCTGCGCGCGGCCGACTCGCGCGATGGCCTGGCGCTGAA
GTTCCGCCTGTCCGAAGGAGGCAGCGGCGAGCATGATCCGTATGCGGACTTCTCGGCCGGCGCGCCGAGCATTACCCACG
GGTTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(77-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W1H1T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

51.253

95.733

0.491
  pilU Vibrio cholerae strain A1552

49.167

96

0.472
  pilU Acinetobacter baylyi ADP1

49.435

94.4

0.467
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.772

99.467

0.445
  pilT Pseudomonas aeruginosa PAK

42.604

90.133

0.384
  pilT Acinetobacter baumannii strain A118

41.42

90.133

0.373
  pilT Acinetobacter nosocomialis M2

41.42

90.133

0.373
  pilT Acinetobacter baumannii D1279779

41.42

90.133

0.373
  pilT Acinetobacter baylyi ADP1

41.176

90.667

0.373
  pilT Pseudomonas stutzeri DSM 10701

41.124

90.133

0.371
  pilT Legionella pneumophila strain Lp02

40.828

90.133

0.368
  pilT Legionella pneumophila strain ERS1305867

40.828

90.133

0.368
  pilT Vibrio cholerae strain A1552

40.841

88.8

0.363
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

40.841

88.8

0.363
  pilT Neisseria gonorrhoeae MS11

38.905

92.533

0.36
  pilT Neisseria meningitidis 8013

38.905

92.533

0.36