Detailed information NTG0826236

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: QJS69_RS06860
• Genome accession: NZ_CP124530
• Coordinates: 1622121..1623251 (+)
• Length: 376 a.a.
• NCBI ID: WP_012437803.1
• Uniprot ID: -
• Organism: Xanthomonas campestris strain YX
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1617121..1628251

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJS69_RS06835	-	1617375..1617965 (-)	591	WP_011037887.1	M23 family metallopeptidase	-
QJS69_RS06840	-	1618109..1618531 (-)	423	WP_011037886.1	HU family DNA-binding protein	-
QJS69_RS06845	proC	1619076..1619936 (-)	861	WP_016944106.1	pyrroline-5-carboxylate reductase	-
QJS69_RS06850	-	1619977..1620660 (-)	684	WP_012437802.1	YggS family pyridoxal phosphate-dependent enzyme	-
QJS69_RS06855	pilT	1620947..1621984 (+)	1038	WP_003489919.1	type IV pilus twitching motility protein PilT	Machinery gene
QJS69_RS06860	pilU	1622121..1623251 (+)	1131	WP_012437803.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
QJS69_RS06865	-	1623531..1624205 (+)	675	WP_221261967.1	YitT family protein	-
QJS69_RS06870	-	1624219..1625118 (-)	900	WP_012437805.1	DUF72 domain-containing protein	-
QJS69_RS06875	-	1625341..1626603 (-)	1263	WP_029216840.1	hypothetical protein	-
QJS69_RS06880	-	1626600..1627139 (-)	540	WP_012437807.1	DNA-3-methyladenine glycosylase I	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41982.19 Da
• Isoelectric Point: 6.6612

>NTDB_id=826236 QJS69_RS06860 WP_012437803.1 1622121..1623251(+) (pilU) [Xanthomonas campestris strain YX]
MSTIDFTSFLKLMAHQNASDLFITSGMPPAIKVHGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRGRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLSQGLDGVEIAEVR

Nucleotide

• Length: 1131 bp

>NTDB_id=826236 QJS69_RS06860 WP_012437803.1 1622121..1623251(+) (pilU) [Xanthomonas campestris strain YX]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCACCAGAATGCGTCGGATCTGTTCATCACCTCTGGCAT
GCCGCCGGCGATCAAGGTGCATGGCAAGATCAGCCCGATCACCCAGACGCCGCTGACCGCGCAGCAGAGTCGCGACCTGG
TGTTGAACGTGATGACGCCCTCGCAGCGCGAGGAATTCGAAAAGACCCACGAGTGCAACTTCGCCATCGGCGTGTCCGGG
GTGGGGCGGTTCCGTGTGAGCTGCTTCTATCAGCGCAACCAGGTGGGAATGGTGCTGCGTCGGATCGAGACGCGCATTCC
CACCGTGGAGGAGCTGAGCCTGCCGCCGGTGATCAAGACACTGGCCATGACCAAGCGCGGCATCATCATCTTTGTCGGCG
CTACCGGTACCGGCAAGTCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAATTCCACCGGGCACATCATCACC
ATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAAGTCGGCATTGATACCGATAG
CTGGGAAAATGCGTTGAAAAACACCCTGCGTCAGGCGCCGGACGTGATCATGATCGGCGAAGTGCGGACCCGCGAAGGCA
TGGACCATGCCATCGCCTTCGCCGAAACCGGTCACCTGGTGCTGTGCACGCTGCATGCCAACAACGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCGGAAGATCGCCGCAATCAGCTGCTGATGGACCTGTCGCTCAACCTCAAGGGTGTGGT
GGCGCAGCAGTTGATCCCGACCCCGGATGGCCGCGGCCGCCGCGTGGCGATGGAGATCATGCTGGGCACGCCGCTGGTGC
AGGACTACATCCGCGACGGCGAGATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACCTGGGCATGCGCACCTTC
GATCAGAGCCTGTTCGAGCTGTACCAGGCGGGCGAGATCAGCTACGAAGACGCACTGCGCTACGCCGACTCGCAGAACGA
GGTGCGCCTGCGCATCAAGCTCTCGCAAGGCGGCGATGCCAAGACGCTGTCGCAGGGGCTCGATGGCGTGGAGATTGCCG
AGGTTCGGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	67.575	97.606	0.66
pilU	Acinetobacter baylyi ADP1	63.585	94.947	0.604
pilU	Vibrio cholerae strain A1552	53.371	94.681	0.505
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.017	94.947	0.399
pilT	Acinetobacter baumannii strain A118	40.407	91.489	0.37
pilT	Acinetobacter nosocomialis M2	40.407	91.489	0.37
pilT	Acinetobacter baumannii D1279779	40.407	91.489	0.37
pilT	Pseudomonas aeruginosa PAK	41.194	89.096	0.367