Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QBS35_RS17655 Genome accession   NZ_CP121800
Coordinates   3870258..3871292 (+) Length   344 a.a.
NCBI ID   WP_005305010.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain DAMIAN 19342     
Function   mediate the depolymerization of the type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3865258..3876292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS35_RS17625 - 3866928..3867239 (+) 312 WP_017780459.1 hypothetical protein -
  QBS35_RS17630 - 3867303..3867722 (-) 420 WP_005304995.1 DUF4426 domain-containing protein -
  QBS35_RS17635 yggU 3867741..3868040 (-) 300 WP_005304998.1 DUF167 family protein YggU -
  QBS35_RS17640 - 3868040..3868591 (-) 552 WP_005305000.1 YggT family protein -
  QBS35_RS17645 proC 3868632..3869456 (-) 825 WP_017780457.1 pyrroline-5-carboxylate reductase -
  QBS35_RS17650 - 3869517..3870218 (-) 702 WP_201880082.1 YggS family pyridoxal phosphate-dependent enzyme -
  QBS35_RS17655 pilT 3870258..3871292 (+) 1035 WP_005305010.1 type IVa pilus ATPase TapT Machinery gene
  QBS35_RS17660 pilU 3871321..3872430 (+) 1110 WP_010636179.1 type IVa pilus ATPase TapU Machinery gene
  QBS35_RS17665 yaaA 3872462..3873235 (+) 774 WP_201880079.1 peroxide stress protein YaaA -
  QBS35_RS17670 srmB 3873412..3874635 (-) 1224 WP_010636177.1 ATP-dependent RNA helicase SrmB -
  QBS35_RS17675 - 3874764..3875474 (+) 711 WP_043171430.1 methyltransferase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38319.12 Da        Isoelectric Point: 6.7439

>NTDB_id=814311 QBS35_RS17655 WP_005305010.1 3870258..3871292(+) (pilT) [Aeromonas dhakensis strain DAMIAN 19342]
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRKELEENFEVDFSFEVPNLAR
FRVNAFQQARGSGAVFRTIPSTVLSLEDLDAPEIFRKIAEYPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIED
PIEFVHENKRCLVNQREVHRDTKSFSNALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSL
KQLVSRGMVAALDAKAKAVDPNTI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=814311 QBS35_RS17655 WP_005305010.1 3870258..3871292(+) (pilT) [Aeromonas dhakensis strain DAMIAN 19342]
ATGGATATCACAGAGTTATTGGCTTTCAGTGTAAAACATAAAGCCTCGGATCTACACCTCTCGGCCGGGGTTCCCCCGAT
GATCAGGGTTGATGGCGAGGTTCGCAAGATCAATTTGCCCGCCCTGGAGCACCGGGAAGTACACGCCCTCATCTATGACA
TCATGAACGACCACCAGCGCAAGGAACTGGAAGAGAACTTCGAGGTGGACTTCTCGTTCGAGGTGCCGAACCTCGCTCGC
TTCCGGGTCAACGCCTTCCAGCAGGCGCGCGGCTCCGGCGCGGTATTTCGGACCATCCCCAGTACTGTGCTGAGCCTGGA
AGATCTGGATGCCCCGGAGATCTTCCGCAAGATTGCCGAATACCCCCGCGGCCTAGTACTGGTGACCGGCCCAACCGGCT
CGGGCAAATCCACCACCCTGGCGGCCATGGTCAACTACATCAACGAGAACTTCCATCACCACATCCTCACCATCGAGGAT
CCCATCGAATTCGTGCACGAGAACAAGCGCTGCCTGGTGAACCAGCGGGAAGTGCACCGCGACACCAAGAGCTTCAGCAA
CGCCCTGCGCTCGGCGCTGCGGGAAGACCCGGACATCATACTGGTGGGCGAGATGCGCGATCTGGAAACCATTCGTCTGG
CCATGACCGCGGCCGAGACCGGTCACCTGGTGTTCGGCACCCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGGATC
ATCGACGTCTTCCCCGGTGCGGAAAAAGACATGGTGCGCTCCATGCTCTCCGAATCGTTGCGGGCGGTCATCTCCCAGAC
CCTGCTCAAGCGCATCGGCGGCGGCCGGGTAGCGGCCCACGAGATCATGATGGGTATTCCTGCCGTGCGAAACCTCATAC
GGGAGGACAAGATCGCCCAGCTCTACTCGGTGATCCAGACCGGGATGACCCACGGCATGCAGACCATGGATCAGAGCCTC
AAGCAGCTGGTGAGCCGCGGCATGGTGGCGGCGCTGGATGCCAAGGCCAAGGCGGTCGATCCCAACACCATCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baylyi ADP1

77.326

100

0.773
  pilT Acinetobacter nosocomialis M2

77.035

100

0.77
  pilT Acinetobacter baumannii D1279779

76.744

100

0.767
  pilT Acinetobacter baumannii strain A118

76.744

100

0.767
  pilT Pseudomonas stutzeri DSM 10701

76.833

99.128

0.762
  pilT Pseudomonas aeruginosa PAK

75.953

99.128

0.753
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

76.261

97.965

0.747
  pilT Vibrio cholerae strain A1552

76.261

97.965

0.747
  pilT Legionella pneumophila strain Lp02

72.647

98.837

0.718
  pilT Legionella pneumophila strain ERS1305867

72.647

98.837

0.718
  pilT Neisseria meningitidis 8013

70.796

98.547

0.698
  pilT Neisseria gonorrhoeae MS11

70.501

98.547

0.695
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.754

99.419

0.515
  pilU Vibrio cholerae strain A1552

42.899

100

0.43
  pilU Pseudomonas stutzeri DSM 10701

40.58

100

0.407
  pilU Acinetobacter baylyi ADP1

40.462

100

0.407