Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RW107_RS05370 Genome accession   NZ_CP136257
Coordinates   1052887..1053534 (+) Length   215 a.a.
NCBI ID   WP_003233377.1    Uniprot ID   -
Organism   Bacillus subtilis strain A9     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1047887..1058534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS05355 (RW107_05355) glpD 1048060..1049727 (+) 1668 WP_128441485.1 glycerol-3-phosphate dehydrogenase -
  RW107_RS05360 (RW107_05360) pgcA 1049857..1051602 (+) 1746 WP_015715570.1 phosphoglucomutase -
  RW107_RS05365 (RW107_05365) yhcY 1051751..1052890 (+) 1140 WP_032677420.1 two-component system sensor histidine kinase YhcY -
  RW107_RS05370 (RW107_05370) vraR 1052887..1053534 (+) 648 WP_003233377.1 two-component system response regulator YhcZ Regulator
  RW107_RS05375 (RW107_05375) yhdA 1053531..1054055 (+) 525 WP_032677419.1 FMN-dependent NADPH-azoreductase -
  RW107_RS05380 (RW107_05380) yhdB 1054070..1054312 (-) 243 WP_003233373.1 YhdB family protein -
  RW107_RS05385 (RW107_05385) yhdC 1054513..1054836 (+) 324 WP_003233371.1 YqzG/YhdC family protein -
  RW107_RS05390 (RW107_05390) lytF 1054878..1056380 (-) 1503 WP_249385600.1 peptidoglycan endopeptidase LytF -
  RW107_RS05395 (RW107_05395) nsrR 1056533..1056973 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24189.88 Da        Isoelectric Point: 6.3039

>NTDB_id=813984 RW107_RS05370 WP_003233377.1 1052887..1053534(+) (vraR) [Bacillus subtilis strain A9]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEILK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=813984 RW107_RS05370 WP_003233377.1 1052887..1053534(+) (vraR) [Bacillus subtilis strain A9]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACTGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCGAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
TAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.4