Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   RMQ62_RS01090 Genome accession   NZ_CP135065
Coordinates   225770..226840 (+) Length   356 a.a.
NCBI ID   WP_029171773.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 220770..231840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS01065 (RMQ62_01065) - 221508..221840 (+) 333 WP_002935001.1 putative DNA-binding protein -
  RMQ62_RS01070 (RMQ62_01070) ffh 221853..223427 (+) 1575 WP_002935002.1 signal recognition particle protein -
  RMQ62_RS01075 (RMQ62_01075) - 223621..224289 (+) 669 WP_029171776.1 SatD family protein -
  RMQ62_RS01080 (RMQ62_01080) - 224294..225034 (+) 741 WP_029171775.1 DUF3307 domain-containing protein -
  RMQ62_RS01085 (RMQ62_01085) - 225100..225621 (+) 522 WP_029171774.1 AAA family ATPase -
  RMQ62_RS01090 (RMQ62_01090) xerS 225770..226840 (+) 1071 WP_029171773.1 tyrosine recombinase XerS Machinery gene
  RMQ62_RS01095 (RMQ62_01095) - 227181..228689 (-) 1509 WP_313680910.1 phosphomannomutase/phosphoglucomutase -
  RMQ62_RS01100 (RMQ62_01100) - 228764..229705 (-) 942 WP_313680909.1 sensor histidine kinase -
  RMQ62_RS01105 (RMQ62_01105) braR 229702..230367 (-) 666 WP_313680908.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41545.76 Da        Isoelectric Point: 9.3408

>NTDB_id=808468 RMQ62_RS01090 WP_029171773.1 225770..226840(+) (xerS) [Streptococcus suis strain ID24665]
MRRELLLEKIDQLKEIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYRRFFEWLQDSDLVAVERIADIPLDVLEHLTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVDKEYQVKLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDS
VNVAGFAKPYLEAYMSIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=808468 RMQ62_RS01090 WP_029171773.1 225770..226840(+) (xerS) [Streptococcus suis strain ID24665]
ATGAGACGCGAGTTGTTATTGGAAAAAATTGATCAACTAAAAGAAATCATGCCTTGGTATGTTCTGGAATATTATCAGTC
AAAATTGGCTGTGCCTTACAGTTTTACAACCTTGTATGAATACTTGAAAGAATACCGTCGTTTTTTTGAGTGGTTACAGG
ATTCAGATTTGGTAGCTGTTGAACGAATTGCTGACATTCCGCTGGATGTTCTGGAACATCTGACCAAGAAAGATATGGAG
GCTTTTATTCTTTATCTGCGGGAACGTCCCTTGCTGAACGCCAATACCACGCAGAATGGTGTGTCGCAGACCACCATTAA
CCGTACCCTCTCGGCCCTATCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAAAATGAGCAGGGCGAACCCTACTTCT
ATCGCAATGTCATGAAGAAGGTGTCCACTAAGAAGAAGAAGGAAACCTTGGCGGCTCGGGCGGAGAACATCAAGCAAAAG
CTCTTTTTGGGCGATGAAACGATGGAGTTCTTGGACTATGTCGATAAAGAATACCAGGTAAAGTTATCCAAACGTGCCCT
CTCATCCTTCCAGAAAAATAAGGAGCGGGATTTGGCGATTCTGGCACTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAAG
CGGTGAATTTGGATCTTCGAGATGTCAACCTCAATATGATGATCATCGAGGTGACGCGTAAGGGTGGCAAGCGGGACTCG
GTCAATGTGGCTGGCTTTGCTAAACCCTATCTGGAAGCCTATATGAGCATCCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATACAGCCTTCTTCTTATCCGAATACCGCGGTCTGCCCAATCGTATCGACGCTTCTTCTATTGAAAAAATGGTGGCTA
AGTACTCTGCGGACTTCAAGATACGTGTGACACCCCACAAACTCCGTCACACGCTGGCAACACGGCTCTACGACGCCACC
AAGTCGCAAGTTCTGGTCAGTCATCAGCTAGGACACGCCAATACCCAGGTCACCGACCTCTACACTCATATCGTCAACGA
TGAGCAGAAAAATGCTCTTGATCAGTTGTGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834