Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | P1X12_RS11575 | Genome accession | NZ_CP119759 |
| Coordinates | 2774486..2775568 (-) | Length | 360 a.a. |
| NCBI ID | WP_404421688.1 | Uniprot ID | - |
| Organism | Nibricoccus sp. IMCC34717 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2769486..2780568
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1X12_RS11560 | - | 2770296..2772632 (+) | 2337 | WP_404421682.1 | RND family transporter | - |
| P1X12_RS11565 | - | 2772748..2773836 (+) | 1089 | WP_404421684.1 | AI-2E family transporter | - |
| P1X12_RS11570 | - | 2773889..2774410 (+) | 522 | WP_404421686.1 | DUF5069 domain-containing protein | - |
| P1X12_RS11575 | pilT | 2774486..2775568 (-) | 1083 | WP_404421688.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| P1X12_RS11580 | rho | 2775662..2777791 (-) | 2130 | WP_404421690.1 | transcription termination factor Rho | - |
| P1X12_RS11585 | coaE | 2777834..2778394 (-) | 561 | WP_404421692.1 | dephospho-CoA kinase | - |
| P1X12_RS11590 | - | 2778512..2779342 (+) | 831 | WP_404421694.1 | hypothetical protein | - |
| P1X12_RS11595 | - | 2779355..2779762 (+) | 408 | WP_404421696.1 | acyl-CoA thioesterase | - |
Sequence
Protein
Download Length: 360 a.a. Molecular weight: 39770.76 Da Isoelectric Point: 6.5902
>NTDB_id=801029 P1X12_RS11575 WP_404421688.1 2774486..2775568(-) (pilT) [Nibricoccus sp. IMCC34717]
MAYEMNDLLELVVEQNASDLHLQVGQPPTLRISGSMVPVDGADLTPKDTEYLMLAITPDNHQQNVKLNGGCDFGFAFQDK
ARFRVSVLKSKGNYGLVLRQIPNRMFALRDIGLPDKVKELLYRPRGLVLVTGPTGSGKSTTLASMINYINEHRDGHIITI
EDPIEYYHNHKRCVVTQREIGVDVPNFSEAIRRALRQDPDIILVGEMRDLETIEAAISAAETGHLVFGTLHTNSAAKTID
RIVDAFPANMKDMIRTQLASSIQAVISQVLCKKIGGGRVAGLEIMVATTSIQSLIRENKTYRITSDIQTGGSLGMITMDA
HLLSLYTRELITADEALEKAQDSITMRERLLASGAKLREL
MAYEMNDLLELVVEQNASDLHLQVGQPPTLRISGSMVPVDGADLTPKDTEYLMLAITPDNHQQNVKLNGGCDFGFAFQDK
ARFRVSVLKSKGNYGLVLRQIPNRMFALRDIGLPDKVKELLYRPRGLVLVTGPTGSGKSTTLASMINYINEHRDGHIITI
EDPIEYYHNHKRCVVTQREIGVDVPNFSEAIRRALRQDPDIILVGEMRDLETIEAAISAAETGHLVFGTLHTNSAAKTID
RIVDAFPANMKDMIRTQLASSIQAVISQVLCKKIGGGRVAGLEIMVATTSIQSLIRENKTYRITSDIQTGGSLGMITMDA
HLLSLYTRELITADEALEKAQDSITMRERLLASGAKLREL
Nucleotide
Download Length: 1083 bp
>NTDB_id=801029 P1X12_RS11575 WP_404421688.1 2774486..2775568(-) (pilT) [Nibricoccus sp. IMCC34717]
ATGGCGTACGAAATGAACGACTTGCTCGAGCTGGTGGTCGAGCAGAATGCCTCTGATCTCCATCTCCAGGTGGGCCAACC
GCCCACGCTGCGCATCTCCGGCTCCATGGTGCCCGTCGACGGCGCCGACCTCACGCCGAAGGACACCGAGTACCTGATGC
TCGCGATCACCCCCGACAACCACCAGCAAAACGTAAAGCTAAACGGTGGCTGTGACTTCGGGTTCGCTTTCCAAGACAAG
GCCCGCTTCCGCGTCAGCGTCCTCAAGAGCAAGGGCAACTACGGCCTCGTCCTCCGCCAAATCCCCAACCGCATGTTCGC
CCTGCGCGACATCGGCTTGCCCGACAAGGTGAAGGAACTCCTCTATCGCCCACGCGGCCTCGTCCTAGTCACCGGCCCGA
CCGGCTCCGGTAAATCGACCACGCTCGCGTCGATGATCAACTACATCAACGAGCACCGCGACGGCCACATCATCACGATC
GAGGACCCGATCGAATACTACCACAACCACAAGCGTTGCGTCGTCACCCAGCGCGAGATCGGCGTCGACGTCCCCAACTT
CTCCGAAGCCATCCGCCGCGCCCTCCGTCAAGATCCCGATATCATTCTCGTCGGTGAAATGCGCGATCTCGAGACCATCG
AGGCCGCCATCAGCGCCGCCGAAACCGGCCACTTGGTCTTCGGCACGCTCCACACCAACAGCGCCGCCAAGACCATCGAC
CGTATTGTCGATGCGTTTCCCGCGAACATGAAGGACATGATTCGCACCCAGTTGGCGTCGTCGATTCAGGCCGTCATTTC
CCAGGTGCTCTGCAAGAAGATCGGTGGAGGCCGCGTCGCCGGTCTCGAGATCATGGTCGCCACGACCTCGATCCAATCGC
TGATCCGCGAAAATAAAACCTACCGCATCACTTCCGATATCCAGACCGGTGGCTCGCTCGGCATGATCACGATGGACGCC
CACCTCTTGAGCCTCTACACGCGCGAACTCATCACCGCCGACGAGGCCCTCGAGAAAGCCCAGGATTCAATCACCATGCG
CGAGCGCCTGCTCGCGAGCGGCGCCAAGCTCCGCGAGCTGTAA
ATGGCGTACGAAATGAACGACTTGCTCGAGCTGGTGGTCGAGCAGAATGCCTCTGATCTCCATCTCCAGGTGGGCCAACC
GCCCACGCTGCGCATCTCCGGCTCCATGGTGCCCGTCGACGGCGCCGACCTCACGCCGAAGGACACCGAGTACCTGATGC
TCGCGATCACCCCCGACAACCACCAGCAAAACGTAAAGCTAAACGGTGGCTGTGACTTCGGGTTCGCTTTCCAAGACAAG
GCCCGCTTCCGCGTCAGCGTCCTCAAGAGCAAGGGCAACTACGGCCTCGTCCTCCGCCAAATCCCCAACCGCATGTTCGC
CCTGCGCGACATCGGCTTGCCCGACAAGGTGAAGGAACTCCTCTATCGCCCACGCGGCCTCGTCCTAGTCACCGGCCCGA
CCGGCTCCGGTAAATCGACCACGCTCGCGTCGATGATCAACTACATCAACGAGCACCGCGACGGCCACATCATCACGATC
GAGGACCCGATCGAATACTACCACAACCACAAGCGTTGCGTCGTCACCCAGCGCGAGATCGGCGTCGACGTCCCCAACTT
CTCCGAAGCCATCCGCCGCGCCCTCCGTCAAGATCCCGATATCATTCTCGTCGGTGAAATGCGCGATCTCGAGACCATCG
AGGCCGCCATCAGCGCCGCCGAAACCGGCCACTTGGTCTTCGGCACGCTCCACACCAACAGCGCCGCCAAGACCATCGAC
CGTATTGTCGATGCGTTTCCCGCGAACATGAAGGACATGATTCGCACCCAGTTGGCGTCGTCGATTCAGGCCGTCATTTC
CCAGGTGCTCTGCAAGAAGATCGGTGGAGGCCGCGTCGCCGGTCTCGAGATCATGGTCGCCACGACCTCGATCCAATCGC
TGATCCGCGAAAATAAAACCTACCGCATCACTTCCGATATCCAGACCGGTGGCTCGCTCGGCATGATCACGATGGACGCC
CACCTCTTGAGCCTCTACACGCGCGAACTCATCACCGCCGACGAGGCCCTCGAGAAAGCCCAGGATTCAATCACCATGCG
CGAGCGCCTGCTCGCGAGCGGCGCCAAGCTCCGCGAGCTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
52.071 |
93.889 |
0.489 |
| pilT | Pseudomonas aeruginosa PAK |
52.071 |
93.889 |
0.489 |
| pilT | Acinetobacter nosocomialis M2 |
51.183 |
93.889 |
0.481 |
| pilT | Acinetobacter baumannii D1279779 |
51.183 |
93.889 |
0.481 |
| pilT | Acinetobacter baumannii strain A118 |
51.183 |
93.889 |
0.481 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.588 |
94.444 |
0.478 |
| pilT | Acinetobacter baylyi ADP1 |
51.524 |
91.111 |
0.469 |
| pilT | Legionella pneumophila strain ERS1305867 |
49.555 |
93.611 |
0.464 |
| pilT | Legionella pneumophila strain Lp02 |
49.555 |
93.611 |
0.464 |
| pilT | Neisseria meningitidis 8013 |
47.384 |
95.556 |
0.453 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
47.929 |
93.889 |
0.45 |
| pilT | Vibrio cholerae strain A1552 |
47.929 |
93.889 |
0.45 |
| pilT | Neisseria gonorrhoeae MS11 |
47.093 |
95.556 |
0.45 |
| pilU | Acinetobacter baylyi ADP1 |
39.884 |
96.111 |
0.383 |
| pilU | Pseudomonas stutzeri DSM 10701 |
38.841 |
95.833 |
0.372 |
| pilU | Vibrio cholerae strain A1552 |
37.971 |
95.833 |
0.364 |