Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   PY372_RS13370 Genome accession   NZ_CP119301
Coordinates   2860987..2862093 (-) Length   368 a.a.
NCBI ID   WP_005461714.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LC     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2855987..2867093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY372_RS13340 (PY372_13510) - 2856641..2857138 (+) 498 WP_021453096.1 SprT family zinc-dependent metalloprotease -
  PY372_RS13345 (PY372_13515) endA 2857258..2857953 (+) 696 WP_062851976.1 deoxyribonuclease I -
  PY372_RS13350 (PY372_13520) rsmE 2858078..2858809 (+) 732 WP_005461719.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  PY372_RS13355 (PY372_13525) gshB 2858824..2859774 (+) 951 WP_005425823.1 glutathione synthase -
  PY372_RS13360 (PY372_13530) - 2859888..2860451 (+) 564 WP_005461717.1 YqgE/AlgH family protein -
  PY372_RS13365 (PY372_13535) ruvX 2860500..2860925 (+) 426 WP_024699996.1 Holliday junction resolvase RuvX -
  PY372_RS13370 (PY372_13540) pilU 2860987..2862093 (-) 1107 WP_005461714.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  PY372_RS13375 (PY372_13545) pilT 2862124..2863164 (-) 1041 WP_005461712.1 type IV pilus twitching motility protein PilT Machinery gene
  PY372_RS13380 (PY372_13550) - 2863193..2863906 (+) 714 WP_025579697.1 YggS family pyridoxal phosphate-dependent enzyme -
  PY372_RS13385 (PY372_13555) proC 2864026..2864844 (+) 819 WP_062851975.1 pyrroline-5-carboxylate reductase -
  PY372_RS13390 (PY372_13560) - 2864897..2865454 (+) 558 WP_005482440.1 YggT family protein -
  PY372_RS13395 (PY372_13565) yggU 2865454..2865744 (+) 291 WP_193239108.1 DUF167 family protein YggU -
  PY372_RS13400 (PY372_13570) - 2865872..2866303 (+) 432 WP_005461703.1 DUF4426 domain-containing protein -
  PY372_RS13405 (PY372_13575) - 2866421..2867023 (+) 603 WP_015297295.1 XTP/dITP diphosphatase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41415.65 Da        Isoelectric Point: 7.0235

>NTDB_id=798402 PY372_RS13370 WP_005461714.1 2860987..2862093(-) (pilU) [Vibrio parahaemolyticus strain LC]
MDLNKFLEGMLTLKASDLYITVGAPILFRVDGELRPQGEKLTEHDVAKLLDSAMDPDRRQEFRKSRESNFAIVRDCGRFR
VSAFFQRELPGAVIRRIETIIPTFEQLKLPLVLQDLAIAKRGLVLVVGATGSGKSTTMAAMTGYRNSNKTGHILTVEDPI
EFVHEHKRCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERILH
LVPKDQKEQFLFDLSMNLKGVIGQQLIRDKNGQGRHGVFEILLNSPRVSDLIRRGDLHELKSTMARSNEFGMLTFDQSLY
KLVMQGKISEEDALHSADSANDLRLMLKTQRGEPFSTGSLANVKIDMD

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=798402 PY372_RS13370 WP_005461714.1 2860987..2862093(-) (pilU) [Vibrio parahaemolyticus strain LC]
ATGGATCTGAATAAATTTCTTGAAGGTATGTTGACGCTAAAAGCGTCGGATCTTTACATCACGGTTGGTGCGCCAATTCT
ATTTCGTGTGGATGGCGAATTGCGTCCGCAAGGGGAGAAACTCACCGAACATGATGTTGCAAAGTTGCTTGATAGCGCAA
TGGATCCGGATCGGCGTCAGGAGTTTCGCAAAAGCCGCGAATCAAACTTTGCTATCGTCAGAGATTGTGGTCGCTTCCGT
GTTAGTGCTTTTTTTCAGCGAGAACTGCCGGGTGCAGTTATTCGCCGTATCGAAACCATCATTCCTACTTTTGAGCAGTT
AAAACTGCCTTTAGTGCTGCAAGACTTAGCGATTGCCAAGCGTGGTTTGGTGCTGGTGGTCGGCGCGACTGGCTCGGGTA
AATCGACCACGATGGCGGCGATGACGGGCTATCGAAACAGCAACAAAACCGGTCACATCTTGACGGTCGAAGATCCGATC
GAATTTGTGCATGAGCATAAGCGTTGTATCGTAACTCAGCGTGAGGTGGGTTTGGATACCGAGAGCTATGAAGTCGCATT
GAAAAACTCGCTGCGCCAAGCGCCAGATATGATTTTGATTGGCGAGATCCGTAGCCGAGAAACGATGGAATACGCGATGA
CCTTCGCCGAAACGGGTCACTTGTGTATGGCAACGTTGCACGCCAACAACGCCAACCAAGCGTTAGAGCGTATTCTCCAT
TTGGTGCCTAAAGATCAAAAAGAGCAATTTTTGTTTGATTTGTCGATGAACCTAAAAGGCGTGATTGGTCAGCAGCTGAT
CCGTGATAAGAATGGTCAAGGGCGTCATGGTGTGTTTGAAATCTTGCTAAACAGTCCACGAGTGTCGGATTTGATCCGTC
GTGGTGATTTACACGAATTGAAGTCAACCATGGCACGATCCAATGAGTTTGGCATGCTGACGTTTGACCAATCGCTCTAC
AAGCTGGTGATGCAAGGTAAGATCAGCGAAGAGGATGCATTGCACAGTGCGGATTCAGCAAACGATCTTCGTTTAATGCT
GAAAACACAGCGTGGTGAGCCGTTCTCTACAGGCAGTCTTGCCAACGTCAAAATCGATATGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(116-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

83.152

100

0.832
  pilU Pseudomonas stutzeri DSM 10701

58

95.109

0.552
  pilU Acinetobacter baylyi ADP1

55.271

95.38

0.527
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.231

88.315

0.399
  pilT Legionella pneumophila strain ERS1305867

42.773

92.12

0.394
  pilT Legionella pneumophila strain Lp02

42.773

92.12

0.394
  pilT Acinetobacter nosocomialis M2

42.478

92.12

0.391
  pilT Acinetobacter baumannii D1279779

42.478

92.12

0.391
  pilT Acinetobacter baumannii strain A118

42.478

92.12

0.391
  pilT Pseudomonas aeruginosa PAK

42.183

92.12

0.389
  pilT Acinetobacter baylyi ADP1

41.642

92.663

0.386
  pilT Pseudomonas stutzeri DSM 10701

41.003

92.12

0.378
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.317

90.761

0.375
  pilT Vibrio cholerae strain A1552

41.317

90.761

0.375
  pilT Neisseria gonorrhoeae MS11

40.361

90.217

0.364
  pilT Neisseria meningitidis 8013

40.361

90.217

0.364