Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PYH53_RS01910 Genome accession   NZ_CP118860
Coordinates   403315..403818 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain 7075     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 398315..408818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH53_RS01880 (PYH53_01880) - 399252..400097 (+) 846 WP_001566903.1 ParB/RepB/Spo0J family partition protein -
  PYH53_RS01885 (PYH53_01885) - 400254..401135 (+) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  PYH53_RS01890 (PYH53_01890) - 401165..401368 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  PYH53_RS01895 (PYH53_01895) ychF 401380..402477 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  PYH53_RS01900 (PYH53_01900) - 402563..402754 (-) 192 WP_001052483.1 hypothetical protein -
  PYH53_RS01905 (PYH53_01905) rpsF 402998..403294 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  PYH53_RS01910 (PYH53_01910) ssbA 403315..403818 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  PYH53_RS01915 (PYH53_01915) rpsR 403870..404112 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  PYH53_RS01920 (PYH53_01920) - 404336..405325 (-) 990 WP_250425947.1 Abi family protein -
  PYH53_RS01925 (PYH53_01925) - 405331..406545 (-) 1215 WP_353437229.1 tyrosine-type recombinase/integrase -
  PYH53_RS01930 (PYH53_01930) - 407006..407701 (-) 696 WP_000668212.1 helix-turn-helix domain-containing protein -
  PYH53_RS01935 (PYH53_01935) - 407845..408057 (+) 213 WP_252559224.1 helix-turn-helix transcriptional regulator -
  PYH53_RS01940 (PYH53_01940) - 408058..408330 (+) 273 WP_353437230.1 helix-turn-helix domain-containing protein -
  PYH53_RS01945 (PYH53_01945) - 408342..408497 (+) 156 WP_353437231.1 pathogenicity island protein -
  PYH53_RS01950 (PYH53_01950) - 408482..408685 (+) 204 WP_001231376.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=795908 PYH53_RS01910 WP_000934799.1 403315..403818(+) (ssbA) [Staphylococcus aureus strain 7075]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=795908 PYH53_RS01910 WP_000934799.1 403315..403818(+) (ssbA) [Staphylococcus aureus strain 7075]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365