Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PYH53_RS01910 Genome accession   NZ_CP118860
Coordinates   403315..403818 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain 7075     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 403315..422779 403315..403818 within 0


Gene organization within MGE regions


Location: 403315..422779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH53_RS01910 (PYH53_01910) ssbA 403315..403818 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  PYH53_RS01915 (PYH53_01915) rpsR 403870..404112 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  PYH53_RS01920 (PYH53_01920) - 404336..405325 (-) 990 WP_250425947.1 Abi family protein -
  PYH53_RS01925 (PYH53_01925) - 405331..406545 (-) 1215 WP_353437229.1 tyrosine-type recombinase/integrase -
  PYH53_RS01930 (PYH53_01930) - 407006..407701 (-) 696 WP_000668212.1 helix-turn-helix domain-containing protein -
  PYH53_RS01935 (PYH53_01935) - 407845..408057 (+) 213 WP_252559224.1 helix-turn-helix transcriptional regulator -
  PYH53_RS01940 (PYH53_01940) - 408058..408330 (+) 273 WP_353437230.1 helix-turn-helix domain-containing protein -
  PYH53_RS01945 (PYH53_01945) - 408342..408497 (+) 156 WP_353437231.1 pathogenicity island protein -
  PYH53_RS01950 (PYH53_01950) - 408482..408685 (+) 204 WP_001231376.1 hypothetical protein -
  PYH53_RS01955 (PYH53_01955) - 408687..409070 (+) 384 WP_353437232.1 pathogenicity island protein -
  PYH53_RS01960 (PYH53_01960) - 409071..409379 (+) 309 WP_353437233.1 DUF1474 family protein -
  PYH53_RS01965 (PYH53_01965) - 409439..411052 (+) 1614 WP_353437234.1 phage resistance protein -
  PYH53_RS01970 (PYH53_01970) - 411223..412026 (+) 804 WP_353437235.1 bifunctional DNA primase/polymerase -
  PYH53_RS01975 (PYH53_01975) - 412013..412285 (+) 273 WP_198975035.1 pathogenicity island protein -
  PYH53_RS01980 (PYH53_01980) - 412287..412928 (+) 642 WP_353437236.1 pathogenicity island protein -
  PYH53_RS01985 (PYH53_01985) - 413276..413617 (+) 342 WP_001190600.1 hypothetical protein -
  PYH53_RS01990 (PYH53_01990) - 413629..414207 (+) 579 WP_353437237.1 pathogenicity island protein -
  PYH53_RS01995 (PYH53_01995) - 414225..414443 (+) 219 WP_000448775.1 capsid morphogenesis B protein -
  PYH53_RS02000 (PYH53_02000) - 414494..415021 (+) 528 WP_262515860.1 spore coat protein -
  PYH53_RS02005 (PYH53_02005) - 415024..415152 (+) 129 WP_353437238.1 hypothetical protein -
  PYH53_RS02010 (PYH53_02010) - 415153..415365 (+) 213 WP_252569588.1 pathogenicity island family protein -
  PYH53_RS02015 (PYH53_02015) - 415362..415931 (+) 570 WP_353437239.1 terminase small subunit -
  PYH53_RS02020 (PYH53_02020) - 416156..416563 (-) 408 WP_045178629.1 alkylhydroperoxidase -
  PYH53_RS02025 (PYH53_02025) - 416666..417079 (+) 414 WP_045178630.1 Lrp/AsnC family transcriptional regulator -
  PYH53_RS02030 (PYH53_02030) - 417841..418779 (-) 939 WP_072426475.1 Abi family protein -
  PYH53_RS02035 (PYH53_02035) - 418818..419527 (-) 710 Protein_404 tyrosine-type recombinase/integrase -
  PYH53_RS02040 (PYH53_02040) selX 419727..420338 (+) 612 WP_000475329.1 staphylococcal enterotoxin-like toxin X -
  PYH53_RS02045 (PYH53_02045) - 420707..421075 (+) 369 WP_000849176.1 YxeA family protein -
  PYH53_RS02050 (PYH53_02050) - 421255..421827 (+) 573 WP_000769722.1 PepSY domain-containing protein -
  PYH53_RS02055 (PYH53_02055) - 421965..422228 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -
  PYH53_RS02060 (PYH53_02060) - 422528..422779 (+) 252 WP_000466743.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=795908 PYH53_RS01910 WP_000934799.1 403315..403818(+) (ssbA) [Staphylococcus aureus strain 7075]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=795908 PYH53_RS01910 WP_000934799.1 403315..403818(+) (ssbA) [Staphylococcus aureus strain 7075]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365