Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | PSR63_RS20930 | Genome accession | NZ_CP118164 |
| Coordinates | 4981470..4982570 (-) | Length | 366 a.a. |
| NCBI ID | WP_274327623.1 | Uniprot ID | - |
| Organism | Bremerella sp. P1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4976470..4987570
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSR63_RS20915 (PSR63_20915) | - | 4977108..4978055 (-) | 948 | WP_274327620.1 | type II secretion system protein | - |
| PSR63_RS20920 (PSR63_20920) | - | 4978218..4979612 (-) | 1395 | WP_274327621.1 | type II secretion system F family protein | - |
| PSR63_RS20925 (PSR63_20925) | - | 4979685..4981409 (-) | 1725 | WP_274327622.1 | ATPase, T2SS/T4P/T4SS family | - |
| PSR63_RS20930 (PSR63_20930) | pilT | 4981470..4982570 (-) | 1101 | WP_274327623.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| PSR63_RS20935 (PSR63_20935) | - | 4982913..4984640 (-) | 1728 | WP_274327624.1 | GspE/PulE family protein | - |
| PSR63_RS20940 (PSR63_20940) | - | 4984909..4985562 (-) | 654 | WP_274327625.1 | hypothetical protein | - |
| PSR63_RS20945 (PSR63_20945) | - | 4985735..4986589 (+) | 855 | WP_274327626.1 | outer membrane beta-barrel protein | - |
Sequence
Protein
Download Length: 366 a.a. Molecular weight: 40313.02 Da Isoelectric Point: 6.9313
>NTDB_id=790892 PSR63_RS20930 WP_274327623.1 4981470..4982570(-) (pilT) [Bremerella sp. P1]
MATILIDKLLQAAVKQGASDIHITVGQPPVFRLHGRMRQLDTKSLEPDDTVSLMKSITPERCQRELQETGGSDFGFAFSD
LARFRVSIFRQRGNISMVLRQIPNDMLTPEQLGLPAKVLELCHRPRGLFLVTGPTGSGKSTTLASVINHLNETVDHHIIT
IEDPIEFYHYHKKSTVNQREIGVDVPSFSEAIRRALRQDPDVILVGEMRDLETIEAAISAAETGHVVFGTLHTNSAASTV
DRIIDVFPAGQQDQIRTQLGSALLGVLAQTLCPKIGGGRVAAYELLNVTSGISNLIRENKTFRIPSMIQTGSKHGMILMD
DSLFNHWRAERVTMEDALAKAQNPNDLAKRIADARRGNVDDREGAA
MATILIDKLLQAAVKQGASDIHITVGQPPVFRLHGRMRQLDTKSLEPDDTVSLMKSITPERCQRELQETGGSDFGFAFSD
LARFRVSIFRQRGNISMVLRQIPNDMLTPEQLGLPAKVLELCHRPRGLFLVTGPTGSGKSTTLASVINHLNETVDHHIIT
IEDPIEFYHYHKKSTVNQREIGVDVPSFSEAIRRALRQDPDVILVGEMRDLETIEAAISAAETGHVVFGTLHTNSAASTV
DRIIDVFPAGQQDQIRTQLGSALLGVLAQTLCPKIGGGRVAAYELLNVTSGISNLIRENKTFRIPSMIQTGSKHGMILMD
DSLFNHWRAERVTMEDALAKAQNPNDLAKRIADARRGNVDDREGAA
Nucleotide
Download Length: 1101 bp
>NTDB_id=790892 PSR63_RS20930 WP_274327623.1 4981470..4982570(-) (pilT) [Bremerella sp. P1]
ATGGCCACGATTCTCATTGACAAGTTGTTGCAGGCCGCTGTGAAGCAGGGCGCAAGCGATATCCATATCACGGTGGGACA
ACCGCCAGTGTTTCGTTTGCACGGTCGCATGCGTCAACTCGACACGAAATCGTTGGAACCCGACGATACTGTCTCGCTGA
TGAAAAGCATCACGCCGGAACGCTGCCAACGAGAACTTCAGGAAACGGGTGGTTCCGACTTTGGTTTTGCCTTCTCGGAC
TTGGCCCGTTTCCGTGTGTCGATTTTCCGACAACGTGGAAACATCTCGATGGTGTTGCGTCAGATTCCCAATGACATGCT
CACCCCCGAGCAGTTGGGGCTGCCAGCCAAAGTCCTTGAGCTCTGCCATCGACCGCGTGGCTTGTTCCTAGTGACCGGGC
CTACCGGTTCGGGTAAGTCCACCACGCTGGCCTCGGTGATCAACCACCTCAACGAAACCGTTGACCACCATATCATCACG
ATCGAAGACCCGATCGAATTTTATCACTACCACAAGAAGTCGACGGTCAATCAGCGCGAAATCGGTGTTGATGTGCCCTC
CTTCTCGGAAGCCATTCGTCGTGCGTTGCGTCAGGACCCTGACGTGATCCTCGTGGGCGAAATGCGTGACTTGGAAACGA
TTGAAGCAGCCATTTCCGCGGCGGAAACCGGGCACGTGGTGTTCGGGACGTTGCATACCAACAGTGCCGCCAGTACCGTC
GACCGTATCATCGACGTGTTCCCGGCTGGCCAGCAGGATCAGATTCGTACGCAGTTGGGTTCGGCCCTCCTGGGCGTGCT
GGCCCAGACGTTGTGCCCCAAGATTGGCGGCGGACGTGTGGCAGCCTACGAGCTACTGAACGTGACCTCAGGTATTTCCA
ACCTGATCCGTGAAAACAAGACATTCCGTATTCCATCGATGATTCAAACCGGCTCGAAGCACGGGATGATCCTGATGGAC
GACTCCCTTTTCAATCACTGGCGGGCCGAACGAGTCACCATGGAAGACGCGTTGGCCAAAGCCCAAAACCCGAATGACCT
GGCAAAGCGTATCGCCGACGCCCGACGTGGCAATGTCGACGATCGAGAAGGTGCCGCGTAA
ATGGCCACGATTCTCATTGACAAGTTGTTGCAGGCCGCTGTGAAGCAGGGCGCAAGCGATATCCATATCACGGTGGGACA
ACCGCCAGTGTTTCGTTTGCACGGTCGCATGCGTCAACTCGACACGAAATCGTTGGAACCCGACGATACTGTCTCGCTGA
TGAAAAGCATCACGCCGGAACGCTGCCAACGAGAACTTCAGGAAACGGGTGGTTCCGACTTTGGTTTTGCCTTCTCGGAC
TTGGCCCGTTTCCGTGTGTCGATTTTCCGACAACGTGGAAACATCTCGATGGTGTTGCGTCAGATTCCCAATGACATGCT
CACCCCCGAGCAGTTGGGGCTGCCAGCCAAAGTCCTTGAGCTCTGCCATCGACCGCGTGGCTTGTTCCTAGTGACCGGGC
CTACCGGTTCGGGTAAGTCCACCACGCTGGCCTCGGTGATCAACCACCTCAACGAAACCGTTGACCACCATATCATCACG
ATCGAAGACCCGATCGAATTTTATCACTACCACAAGAAGTCGACGGTCAATCAGCGCGAAATCGGTGTTGATGTGCCCTC
CTTCTCGGAAGCCATTCGTCGTGCGTTGCGTCAGGACCCTGACGTGATCCTCGTGGGCGAAATGCGTGACTTGGAAACGA
TTGAAGCAGCCATTTCCGCGGCGGAAACCGGGCACGTGGTGTTCGGGACGTTGCATACCAACAGTGCCGCCAGTACCGTC
GACCGTATCATCGACGTGTTCCCGGCTGGCCAGCAGGATCAGATTCGTACGCAGTTGGGTTCGGCCCTCCTGGGCGTGCT
GGCCCAGACGTTGTGCCCCAAGATTGGCGGCGGACGTGTGGCAGCCTACGAGCTACTGAACGTGACCTCAGGTATTTCCA
ACCTGATCCGTGAAAACAAGACATTCCGTATTCCATCGATGATTCAAACCGGCTCGAAGCACGGGATGATCCTGATGGAC
GACTCCCTTTTCAATCACTGGCGGGCCGAACGAGTCACCATGGAAGACGCGTTGGCCAAAGCCCAAAACCCGAATGACCT
GGCAAAGCGTATCGCCGACGCCCGACGTGGCAATGTCGACGATCGAGAAGGTGCCGCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
52.235 |
97.814 |
0.511 |
| pilT | Pseudomonas aeruginosa PAK |
49.415 |
93.443 |
0.462 |
| pilT | Acinetobacter baylyi ADP1 |
48.968 |
92.623 |
0.454 |
| pilT | Pseudomonas stutzeri DSM 10701 |
48.246 |
93.443 |
0.451 |
| pilT | Acinetobacter baumannii D1279779 |
51.887 |
86.885 |
0.451 |
| pilT | Acinetobacter nosocomialis M2 |
51.887 |
86.885 |
0.451 |
| pilT | Acinetobacter baumannii strain A118 |
51.887 |
86.885 |
0.451 |
| pilT | Legionella pneumophila strain ERS1305867 |
50.943 |
86.885 |
0.443 |
| pilT | Legionella pneumophila strain Lp02 |
50.943 |
86.885 |
0.443 |
| pilT | Neisseria meningitidis 8013 |
46.802 |
93.989 |
0.44 |
| pilT | Neisseria gonorrhoeae MS11 |
46.512 |
93.989 |
0.437 |
| pilT | Vibrio cholerae strain A1552 |
48.896 |
86.612 |
0.423 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.896 |
86.612 |
0.423 |
| pilU | Acinetobacter baylyi ADP1 |
39.227 |
98.907 |
0.388 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.233 |
93.716 |
0.377 |
| pilU | Vibrio cholerae strain A1552 |
37.288 |
96.721 |
0.361 |