Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PT256_RS11680 Genome accession   NZ_CP117817
Coordinates   2577971..2578675 (+) Length   234 a.a.
NCBI ID   WP_015961431.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5573     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2572971..2583675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT256_RS11655 (PT256_11655) - 2574202..2575080 (+) 879 WP_042755104.1 lpg2327 family Dot/Icm T4SS effector -
  PT256_RS11660 (PT256_11660) lem22 2575345..2575728 (+) 384 WP_014842288.1 Dot/Icm T4SS effector Lem22 -
  PT256_RS11665 (PT256_11665) - 2575922..2576152 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  PT256_RS11670 (PT256_11670) - 2576133..2577029 (+) 897 WP_011947174.1 polyprenyl synthetase family protein -
  PT256_RS11675 (PT256_11675) bioC 2577073..2577927 (-) 855 WP_015961430.1 malonyl-ACP O-methyltransferase BioC -
  PT256_RS11680 (PT256_11680) comFC 2577971..2578675 (+) 705 WP_015961431.1 ComF family protein Machinery gene
  PT256_RS11685 (PT256_11685) - 2578704..2579777 (-) 1074 WP_011947177.1 site-2 protease family protein -
  PT256_RS11690 (PT256_11690) - 2579834..2580112 (-) 279 WP_010948040.1 hypothetical protein -
  PT256_RS11695 (PT256_11695) - 2580151..2580306 (+) 156 WP_162267450.1 hypothetical protein -
  PT256_RS11700 (PT256_11700) hemA 2580430..2581704 (+) 1275 WP_015444133.1 glutamyl-tRNA reductase -
  PT256_RS11705 (PT256_11705) prfA 2581688..2582776 (+) 1089 WP_042755102.1 peptide chain release factor 1 -
  PT256_RS11710 (PT256_11710) prmC 2582769..2583632 (+) 864 WP_027225915.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26744.34 Da        Isoelectric Point: 9.2792

>NTDB_id=787705 PT256_RS11680 WP_015961431.1 2577971..2578675(+) (comFC) [Legionella pneumophila strain D5573]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLNIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVPPVTYEHVMIVDDLLTTGSTANEIAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=787705 PT256_RS11680 WP_015961431.1 2577971..2578675(+) (comFC) [Legionella pneumophila strain D5573]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAACTTGGATCTTGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGTGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTT
GAAGAGCCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCTTTTCTAAAACAATTACT
TCTTAATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGCCAA
AAAATAATCAATACCGCTTCACAAGCCAACCTTGATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTACC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATAGCACATACAT
TAAAAAATGCCGGGGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAGAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

100

100

1
  comFC Legionella pneumophila strain ERS1305867

100

83.761

0.838