Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PJ250_RS13080 Genome accession   NZ_CP116339
Coordinates   2919364..2919780 (-) Length   138 a.a.
NCBI ID   WP_271645014.1    Uniprot ID   -
Organism   Pseudoxanthomonas sp. JBR18     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2914364..2924780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ250_RS13065 (PJ250_13065) - 2915227..2916090 (-) 864 WP_271645011.1 A24 family peptidase -
  PJ250_RS13070 (PJ250_13070) pilC 2916094..2917356 (-) 1263 WP_271645012.1 type II secretion system F family protein Machinery gene
  PJ250_RS13075 (PJ250_13075) pilB 2917547..2919283 (-) 1737 WP_271645013.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PJ250_RS13080 (PJ250_13080) pilA 2919364..2919780 (-) 417 WP_271645014.1 pilin Machinery gene
  PJ250_RS13085 (PJ250_13085) pilA2 2919917..2920351 (-) 435 WP_271645015.1 pilin Machinery gene
  PJ250_RS13090 (PJ250_13090) pilR 2920988..2922433 (-) 1446 WP_271645017.1 sigma-54 dependent transcriptional regulator Regulator
  PJ250_RS13095 (PJ250_13095) - 2922530..2924137 (-) 1608 WP_271645018.1 ATP-binding protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14238.38 Da        Isoelectric Point: 4.5877

>NTDB_id=776662 PJ250_RS13080 WP_271645014.1 2919364..2919780(-) (pilA) [Pseudoxanthomonas sp. JBR18]
MKQTRGFTLIELMIVVAIVAILAAIALPAYQGYVTRARVSEAISMMAAAKAIVSENINNQNALDASSACSGVTDLTVATE
NVQSLSCSSSGILAVSTTARAGAVTLQLSPEFNADAPIIWTCTLVSGDPAYVPANCRS

Nucleotide


Download         Length: 417 bp        

>NTDB_id=776662 PJ250_RS13080 WP_271645014.1 2919364..2919780(-) (pilA) [Pseudoxanthomonas sp. JBR18]
ATGAAGCAAACAAGAGGCTTTACCCTCATCGAACTGATGATCGTGGTCGCCATTGTTGCCATCCTGGCCGCCATCGCGCT
GCCTGCGTATCAAGGCTATGTGACCAGGGCGCGGGTGTCAGAGGCGATTTCCATGATGGCTGCTGCCAAGGCCATTGTTT
CGGAAAATATCAACAACCAGAATGCGCTTGATGCCTCCAGTGCCTGCAGCGGCGTTACTGATCTGACGGTTGCCACAGAG
AATGTCCAGTCACTGTCCTGTAGCAGCAGCGGCATCCTGGCGGTCTCCACAACAGCGCGCGCCGGTGCCGTGACTTTGCA
GCTGTCGCCTGAGTTCAACGCTGATGCGCCCATCATCTGGACATGTACGCTAGTGTCAGGGGATCCGGCCTATGTCCCCG
CCAACTGCCGAAGCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-137)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

42.236

100

0.493
  comP Acinetobacter baylyi ADP1

45.27

100

0.486
  pilA2 Legionella pneumophila strain ERS1305867

47.445

99.275

0.471
  pilA2 Legionella pneumophila str. Paris

46.715

99.275

0.464
  pilA Acinetobacter baumannii strain A118

35.135

100

0.377
  pilA Haemophilus influenzae Rd KW20

38.235

98.551

0.377
  pilA Haemophilus influenzae 86-028NP

37.5

98.551

0.37
  pilA/pilAI Pseudomonas stutzeri DSM 10701

36.17

100

0.37
  pilA Vibrio cholerae C6706

34.247

100

0.362
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

34.247

100

0.362
  pilA Vibrio cholerae strain A1552

34.247

100

0.362
  comF Acinetobacter baylyi ADP1

35.461

100

0.362
  pilA/pilA1 Eikenella corrodens VA1

35.211

100

0.362