Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PJ250_RS13090 Genome accession   NZ_CP116339
Coordinates   2920988..2922433 (-) Length   481 a.a.
NCBI ID   WP_271645017.1    Uniprot ID   -
Organism   Pseudoxanthomonas sp. JBR18     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2915988..2927433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ250_RS13070 (PJ250_13070) pilC 2916094..2917356 (-) 1263 WP_271645012.1 type II secretion system F family protein Machinery gene
  PJ250_RS13075 (PJ250_13075) pilB 2917547..2919283 (-) 1737 WP_271645013.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PJ250_RS13080 (PJ250_13080) pilA 2919364..2919780 (-) 417 WP_271645014.1 pilin Machinery gene
  PJ250_RS13085 (PJ250_13085) pilA2 2919917..2920351 (-) 435 WP_271645015.1 pilin Machinery gene
  PJ250_RS13090 (PJ250_13090) pilR 2920988..2922433 (-) 1446 WP_271645017.1 sigma-54 dependent transcriptional regulator Regulator
  PJ250_RS13095 (PJ250_13095) - 2922530..2924137 (-) 1608 WP_271645018.1 ATP-binding protein -
  PJ250_RS13100 (PJ250_13100) sucC 2924335..2925498 (+) 1164 WP_271645019.1 ADP-forming succinate--CoA ligase subunit beta -
  PJ250_RS13105 (PJ250_13105) sucD 2925671..2926543 (+) 873 WP_271645020.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52522.01 Da        Isoelectric Point: 6.2024

>NTDB_id=776664 PJ250_RS13090 WP_271645017.1 2920988..2922433(-) (pilR) [Pseudoxanthomonas sp. JBR18]
MSDPRSALIVDDERDIRELLTLTLGRMGIRIDTAANLGEARELLSRNPYDLCFTDMRLPDGNGIELVSEISANFPKTPVA
MITAFGNVELAVEALKAGAFDFVSKPVDLTVLRGLVRHALELNNTERPAPAPAPPQHAMRLLGDSPAMEDLRATISKVAR
SQAPVYILGESGVGKELVARTIHEQGARASGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKQGLFQAASGGTLFLD
EVAELPLPMQVKLLRAIQEKAVRPVGASSEVQVDVRILSATHKDLGELAHDGRFRHDLYYRINVIELRVPPLRERTGDLP
QLTKAILTRLAGHQQRQPPQLSPVALDLLAQYPFPGNVRELENILERAMAMADEDAIDAADLRLPQVERRAAPQSSTQPA
PQDYDPFRSAPPAFGQQPASSGQPQPASEAEGPLPSYIEQMERAAIHKALEDNRWNKTKAAAQLGITFRALRYKLKKLGI
E

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=776664 PJ250_RS13090 WP_271645017.1 2920988..2922433(-) (pilR) [Pseudoxanthomonas sp. JBR18]
ATGAGCGACCCCCGTAGCGCCCTGATCGTCGACGACGAGCGCGACATCCGAGAGCTGCTGACCCTGACCCTGGGACGCAT
GGGCATCCGGATCGATACCGCCGCCAACCTTGGCGAGGCCCGCGAATTGTTGTCCCGCAACCCCTACGACCTGTGCTTTA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCTCGGCCAACTTTCCCAAGACCCCGGTGGCG
ATGATCACCGCCTTCGGTAACGTCGAACTGGCCGTGGAGGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGATCTCACCGTCCTGCGCGGGCTGGTCAGGCACGCCCTGGAGCTCAACAACACCGAGCGCCCGGCGCCCGCACCGGCCC
CGCCCCAGCACGCCATGCGCCTGCTCGGCGATTCGCCGGCGATGGAAGACCTGCGCGCCACCATTTCCAAGGTGGCCCGC
AGCCAGGCCCCGGTCTATATCCTGGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCCCGCACCATCCACGAGCAAGGCGC
GCGTGCGTCCGGCCCCTTCGTCCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCACA
AGAAAGGCAGTTTCACCGGCGCCCATGCCGACAAACAGGGCCTGTTCCAGGCCGCCAGTGGCGGCACGCTGTTCCTGGAC
GAGGTGGCCGAACTGCCCTTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCCCGGTCGGCGC
CTCCAGCGAGGTCCAGGTCGATGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGGCGAACTGGCCCACGATGGCCGCT
TCCGTCACGACCTGTACTACCGCATCAACGTGATCGAACTACGCGTCCCGCCCCTGCGCGAGCGCACCGGCGACCTGCCC
CAACTCACCAAGGCCATCCTGACCCGCCTGGCCGGGCACCAGCAGCGCCAGCCCCCGCAGCTCTCACCGGTGGCGCTGGA
CCTGCTGGCGCAGTACCCGTTCCCGGGCAATGTGCGCGAACTGGAGAACATCCTGGAGCGCGCCATGGCCATGGCCGACG
AGGACGCCATCGATGCGGCCGACCTGCGCCTGCCGCAGGTCGAGCGCCGCGCCGCGCCCCAGTCTTCGACGCAGCCGGCG
CCGCAGGACTATGACCCTTTCCGCTCGGCTCCGCCCGCCTTCGGGCAACAGCCAGCCTCGTCGGGACAGCCCCAACCCGC
CAGCGAGGCGGAAGGCCCGCTGCCCTCCTACATCGAACAGATGGAACGCGCGGCCATCCACAAGGCGCTGGAAGACAACC
GCTGGAACAAGACCAAAGCCGCCGCGCAGCTGGGCATCACGTTCCGCGCCCTGCGCTACAAGCTCAAGAAGCTCGGGATC
GAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(438-478)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.168

99.168

0.597
  pilR Acinetobacter baumannii strain A118

47.071

99.376

0.468