Detailed information NTG0776660

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PJ250_RS13070
• Genome accession: NZ_CP116339
• Coordinates: 2916094..2917356 (-)
• Length: 420 a.a.
• NCBI ID: WP_271645012.1
• Uniprot ID: -
• Organism: Pseudoxanthomonas sp. JBR18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2911094..2922356

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PJ250_RS13050 (PJ250_13050)	-	2911661..2912305 (+)	645	WP_271645007.1	HAD hydrolase-like protein	-
PJ250_RS13055 (PJ250_13055)	pyk	2912534..2914003 (+)	1470	WP_271645009.1	pyruvate kinase	-
PJ250_RS13060 (PJ250_13060)	-	2914106..2915110 (+)	1005	WP_271645010.1	class I fructose-bisphosphate aldolase	-
PJ250_RS13065 (PJ250_13065)	-	2915227..2916090 (-)	864	WP_271645011.1	A24 family peptidase	-
PJ250_RS13070 (PJ250_13070)	pilC	2916094..2917356 (-)	1263	WP_271645012.1	type II secretion system F family protein	Machinery gene
PJ250_RS13075 (PJ250_13075)	pilB	2917547..2919283 (-)	1737	WP_271645013.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PJ250_RS13080 (PJ250_13080)	pilA	2919364..2919780 (-)	417	WP_271645014.1	pilin	Machinery gene
PJ250_RS13085 (PJ250_13085)	pilA2	2919917..2920351 (-)	435	WP_271645015.1	pilin	Machinery gene

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 45109.39 Da
• Isoelectric Point: 10.3639

>NTDB_id=776660 PJ250_RS13070 WP_271645012.1 2916094..2917356(-) (pilC) [Pseudoxanthomonas sp. JBR18]
MAVTRSAARKSTPVARNTKQLSTFVWQGADKRGVKMKGEQDARNANLLRAELRAKGITPTVVKPKPKPLFGSAGKPIKPG
DIAFFSRQMATMMKSGVPIITSLEIIGGGHKNPRMKKMIEGIRTDIEGGSSLSEAISKYPVQFDELYRNLVRAGEGAGVL
ETVLDTIATYKENLEALKGKIKKAMFYPAMTIAVALIVSAILLIFVVPQFEAVFASFGADLPAFTKMIVAASKVATTYWW
LALIVAGGGAFAFIFALKRSIPMQHAVDRALLKIPVIGQILNNSAIARFARTLAVTFKAGVPLVEALDTVAGATGSTVYE
KAVLRIRDDVAVGYPVNMAMKQTNLFPHMVIQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLIEPAIMVILGVL
VGGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1263 bp

>NTDB_id=776660 PJ250_RS13070 WP_271645012.1 2916094..2917356(-) (pilC) [Pseudoxanthomonas sp. JBR18]
ATGGCCGTAACCCGTTCAGCCGCTCGGAAGTCCACTCCGGTCGCGCGCAACACAAAGCAGCTTTCCACGTTCGTCTGGCA
GGGGGCCGACAAGCGTGGCGTCAAGATGAAGGGCGAGCAGGACGCGAGGAACGCGAACCTGCTCCGCGCCGAGCTGCGTG
CGAAAGGCATCACGCCCACGGTGGTGAAGCCGAAGCCGAAGCCGTTGTTCGGTTCTGCCGGCAAGCCGATCAAGCCAGGC
GACATTGCATTCTTCAGTCGCCAGATGGCGACGATGATGAAATCCGGCGTCCCCATCATCACTTCGCTGGAGATCATCGG
CGGCGGGCACAAGAACCCGCGCATGAAGAAGATGATCGAGGGAATTCGCACCGACATCGAAGGCGGCTCATCCCTGTCCG
AGGCGATCAGCAAATACCCGGTCCAGTTCGATGAGCTGTATCGCAACCTTGTCCGCGCGGGCGAAGGCGCAGGTGTACTG
GAAACGGTGCTGGACACCATTGCGACCTACAAGGAAAACCTCGAAGCGCTGAAGGGCAAGATCAAGAAGGCGATGTTCTA
TCCCGCGATGACGATCGCGGTCGCCCTGATCGTGAGTGCGATTCTGTTGATCTTTGTGGTACCACAGTTCGAGGCCGTGT
TCGCCAGCTTTGGTGCAGATCTTCCGGCCTTCACCAAAATGATCGTCGCTGCATCCAAGGTAGCCACCACCTACTGGTGG
CTCGCTTTGATCGTCGCCGGTGGTGGTGCGTTTGCGTTTATCTTTGCGCTTAAGCGATCAATCCCGATGCAGCACGCAGT
GGACCGTGCGCTGTTGAAGATCCCCGTCATCGGCCAGATCCTCAACAACAGCGCGATCGCACGCTTCGCACGCACCTTGG
CGGTGACCTTCAAGGCGGGCGTGCCCTTGGTCGAAGCCCTCGACACCGTCGCGGGGGCCACCGGCAGCACAGTCTACGAA
AAAGCGGTCCTGCGCATTCGCGACGACGTCGCGGTCGGCTACCCCGTGAACATGGCGATGAAGCAGACCAACCTGTTCCC
GCACATGGTCATCCAGATGACCGCCATCGGTGAGGAAGCCGGCGCACTGGACACCATGCTGTTCAAGGTCGCCGAATACT
TCGAGCAGGAAGTCAACAACGCAGTGGACGCGCTGAGCAGCCTGATCGAGCCTGCGATCATGGTGATTCTGGGCGTCCTG
GTCGGCGGTATGGTGATCGGCATGTATCTCCCGATCTTCAAACTCGGCGCGGTGGTCGGCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (289-411)

• Type II secretion system (T2SS), protein F (T2SSF) (85-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.271	94.762	0.514
pilC	Legionella pneumophila strain ERS1305867	52.97	96.19	0.51
pilC	Acinetobacter baumannii D1279779	51.111	96.429	0.493
pilC	Acinetobacter baylyi ADP1	50.493	96.667	0.488
pilG	Neisseria gonorrhoeae MS11	43.21	96.429	0.417
pilG	Neisseria meningitidis 44/76-A	42.963	96.429	0.414
pilC	Vibrio cholerae strain A1552	39.409	96.667	0.381
pilC	Vibrio campbellii strain DS40M4	38.971	97.143	0.379