Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PG904_RS05375 Genome accession   NZ_CP115941
Coordinates   1145402..1146445 (+) Length   347 a.a.
NCBI ID   WP_075463464.1    Uniprot ID   A0A1U9VFF9
Organism   Ralstonia syzygii strain BDBR229     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1140402..1151445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG904_RS05345 - 1141554..1141796 (+) 243 WP_013211540.1 hypothetical protein -
  PG904_RS05350 - 1141958..1142458 (+) 501 WP_003271865.1 Dps family protein -
  PG904_RS05355 ubiA 1142532..1143410 (+) 879 WP_078222023.1 4-hydroxybenzoate octaprenyltransferase -
  PG904_RS05360 - 1143407..1143685 (-) 279 WP_013211542.1 hypothetical protein -
  PG904_RS05365 proC 1143698..1144522 (-) 825 WP_013211543.1 pyrroline-5-carboxylate reductase -
  PG904_RS05370 - 1144557..1145279 (-) 723 WP_075463463.1 YggS family pyridoxal phosphate-dependent enzyme -
  PG904_RS05375 pilT 1145402..1146445 (+) 1044 WP_075463464.1 type IV pilus twitching motility protein PilT Machinery gene
  PG904_RS05380 pilU 1146498..1147634 (+) 1137 WP_078222022.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  PG904_RS05385 - 1147829..1148269 (+) 441 WP_078222021.1 type IV pilin protein -
  PG904_RS05390 - 1148273..1148761 (+) 489 WP_078222020.1 GspH/FimT family pseudopilin -
  PG904_RS05395 pilV 1148758..1149348 (+) 591 WP_078222019.1 type IV pilus modification protein PilV -
  PG904_RS05400 - 1149345..1150367 (+) 1023 WP_078222018.1 PilW family protein -
  PG904_RS05405 - 1150371..1150907 (+) 537 WP_078222017.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38124.76 Da        Isoelectric Point: 6.8705

>NTDB_id=774525 PG904_RS05375 WP_075463464.1 1145402..1146445(+) (pilT) [Ralstonia syzygii strain BDBR229]
MDIAQLLAFAAKNKASDLHLSAGLPPMIRIHGDMRRINVPALTHQDVHAMVYDIMSDVQRKHYEENLEADFSFEIPGLSR
FRVNAFNQNRGAAAVFRTIPSKVLTLEDLKAPAVFADLAMKPRGLVLVTGPTGSGKSTTLAAMVNHRNESDLGHILTVED
PIEFVHESKKSLINQRELGPHTHSFANALKSALREDPDVVLVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRV
VDVFPSDEKDMVRTMLSESLEAVISQTLLKTRDGSGRVAAHEIMICTPAIRHLIRENKISQMYSMMQTSSGLGMQTLDQC
LAELIKRSAINYADARAIAKNPDAFAN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=774525 PG904_RS05375 WP_075463464.1 1145402..1146445(+) (pilT) [Ralstonia syzygii strain BDBR229]
ATGGACATCGCGCAGCTTCTGGCCTTCGCCGCCAAGAACAAAGCGTCTGATCTGCACTTGTCGGCGGGCTTGCCCCCGAT
GATCCGGATCCATGGCGACATGCGCCGTATCAACGTGCCAGCGCTCACGCACCAGGATGTTCACGCCATGGTGTACGACA
TCATGAGCGACGTGCAGCGCAAGCATTACGAAGAAAACCTGGAAGCCGACTTCTCTTTCGAGATCCCCGGGCTGTCCCGC
TTCCGGGTCAATGCCTTCAACCAGAACCGCGGCGCCGCCGCCGTGTTCCGGACGATTCCGTCCAAGGTCCTGACGCTGGA
AGACCTGAAGGCGCCGGCCGTCTTCGCCGACCTCGCCATGAAGCCGCGCGGCCTGGTGCTGGTGACGGGGCCGACGGGCT
CGGGCAAGTCGACCACGCTGGCGGCGATGGTCAATCACCGCAACGAAAGCGACCTGGGCCACATCCTCACGGTGGAGGAC
CCGATCGAATTCGTGCACGAATCCAAGAAGAGCCTGATCAACCAGCGCGAACTGGGGCCACATACCCATTCGTTTGCCAA
CGCGCTGAAATCGGCGCTGCGGGAAGACCCGGACGTGGTCCTGGTCGGCGAATTGCGTGACCTGGAAACCATCCGCCTGG
CACTGACGGCGGCCGAAACCGGCCACTTGGTGTTTGGCACGCTGCACACGAGTTCCGCGGCCAAGACCATCGACCGGGTG
GTCGACGTGTTCCCCTCGGATGAGAAGGACATGGTCCGCACCATGTTGTCCGAATCGCTGGAAGCGGTGATCTCGCAGAC
GCTGCTCAAGACGCGCGACGGCTCCGGCCGGGTCGCTGCGCACGAGATCATGATCTGCACGCCGGCCATCCGCCACTTGA
TCCGCGAGAACAAGATCTCGCAGATGTATTCGATGATGCAGACCAGCAGCGGGCTGGGCATGCAGACGCTGGACCAGTGC
CTGGCGGAGCTCATCAAGCGTTCGGCGATCAACTACGCCGACGCGCGCGCCATCGCCAAGAATCCGGACGCGTTCGCGAA
CTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U9VFF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

71.884

99.424

0.715
  pilT Acinetobacter baumannii strain A118

71.884

99.424

0.715
  pilT Acinetobacter nosocomialis M2

71.884

99.424

0.715
  pilT Pseudomonas stutzeri DSM 10701

71.304

99.424

0.709
  pilT Pseudomonas aeruginosa PAK

71.014

99.424

0.706
  pilT Acinetobacter baylyi ADP1

70.145

99.424

0.697
  pilT Neisseria gonorrhoeae MS11

68.497

99.712

0.683
  pilT Neisseria meningitidis 8013

68.497

99.712

0.683
  pilT Legionella pneumophila strain Lp02

67.536

99.424

0.671
  pilT Legionella pneumophila strain ERS1305867

67.536

99.424

0.671
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

66.469

97.118

0.646
  pilT Vibrio cholerae strain A1552

66.469

97.118

0.646
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.578

99.712

0.504
  pilU Acinetobacter baylyi ADP1

42.442

99.135

0.421
  pilU Pseudomonas stutzeri DSM 10701

42.09

96.542

0.406
  pilU Vibrio cholerae strain A1552

42.09

96.542

0.406