Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QQA31_RS04790 Genome accession   NZ_CP126937
Coordinates   969288..970268 (+) Length   326 a.a.
NCBI ID   WP_083574985.1    Uniprot ID   -
Organism   Escherichia coli O2:K1:H4 strain APEC E19019     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 964288..975268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA31_RS04760 (QQA31_04760) yggM 964889..965896 (+) 1008 WP_000745192.1 DUF1202 family protein -
  QQA31_RS04765 (QQA31_04765) hemW 965965..967101 (-) 1137 WP_000239974.1 radical SAM family heme chaperone HemW -
  QQA31_RS04770 (QQA31_04770) rdgB 967094..967687 (-) 594 WP_001174738.1 XTP/dITP diphosphatase -
  QQA31_RS04775 (QQA31_04775) yggU 967695..967985 (-) 291 WP_001277222.1 DUF167 family protein YggU -
  QQA31_RS04780 (QQA31_04780) yggT 967982..968548 (-) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  QQA31_RS04785 (QQA31_04785) yggS 968566..969270 (-) 705 WP_000997804.1 pyridoxal phosphate homeostasis protein -
  QQA31_RS04790 (QQA31_04790) pilT 969288..970268 (+) 981 WP_083574985.1 type IV pilus twitching motility protein PilT Machinery gene
  QQA31_RS04795 (QQA31_04795) ruvX 970442..970858 (-) 417 WP_016239320.1 Holliday junction resolvase RuvX -
  QQA31_RS04800 (QQA31_04800) yqgE 970858..971421 (-) 564 WP_001053178.1 YqgE/AlgH family protein -
  QQA31_RS04805 (QQA31_04805) gshB 971530..972480 (-) 951 WP_000593260.1 glutathione synthase -
  QQA31_RS04810 (QQA31_04810) rsmE 972493..973224 (-) 732 WP_001222509.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  QQA31_RS04815 (QQA31_04815) endA 973304..974011 (-) 708 WP_001305312.1 deoxyribonuclease I -
  QQA31_RS04820 (QQA31_04820) yggI 974106..974603 (-) 498 WP_000858396.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36024.22 Da        Isoelectric Point: 5.9549

>NTDB_id=768827 QQA31_RS04790 WP_083574985.1 969288..970268(+) (pilT) [Escherichia coli O2:K1:H4 strain APEC E19019]
MNMEEIVALSVKHNVSDLHLCSAWPARWHIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYTSQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQR
VKEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=768827 QQA31_RS04790 WP_083574985.1 969288..970268(+) (pilT) [Escherichia coli O2:K1:H4 strain APEC E19019]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCATATTCGCGGGAGAATGGAAGCTGCGCCGTTTGACGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGATTGCGCGGC
AGTGCGTTCGCACAACGGCAAGGTATTTCTCTGGCGTTACGGCTGTTACCTTCGCACTGCCCGCAGCTCGAACAGCTTGG
CGCACCACCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATACCAGTCAGCGATGTTTGATCCAGCAGCGGGAGATTGGTTTGCACTGTATGACTTTCGCATCGGGATTGCG
GGCTGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGATAGCGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGGCATCTGGTGCTGGCGACATTACACACGCGCGGCGCAGCGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCTGCGCAGGAAAAAGATCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCAGTGTTGTCACAAAAACTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTACTGATTAACACACCCGCGGTGGGGAATTTGATTCGTGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGAAAGAAGGGCGCTTGTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.235

100

0.494
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.235

100

0.494
  pilT Neisseria meningitidis 8013

48.476

100

0.488
  pilT Neisseria gonorrhoeae MS11

48.171

100

0.485
  pilT Acinetobacter baylyi ADP1

46.483

100

0.466
  pilT Acinetobacter baumannii D1279779

46.177

100

0.463
  pilT Acinetobacter nosocomialis M2

46.177

100

0.463
  pilT Acinetobacter baumannii strain A118

46.177

100

0.463
  pilT Pseudomonas stutzeri DSM 10701

46.177

100

0.463
  pilT Pseudomonas aeruginosa PAK

45.872

100

0.46
  pilT Legionella pneumophila strain ERS1305867

44.954

100

0.451
  pilT Legionella pneumophila strain Lp02

44.954

100

0.451
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.21

100

0.396
  pilU Pseudomonas stutzeri DSM 10701

37.576

100

0.38
  pilU Acinetobacter baylyi ADP1

36.957

98.773

0.365