Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OZ429_RS14265 Genome accession   NZ_CP114134
Coordinates   3033091..3033501 (-) Length   136 a.a.
NCBI ID   WP_208589542.1    Uniprot ID   -
Organism   Xanthomonas fragariae strain YLX21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3028091..3038501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ429_RS14235 (OZ429_14235) pilR 3028411..3029859 (+) 1449 WP_330873184.1 sigma-54 dependent transcriptional regulator Regulator
  OZ429_RS14240 (OZ429_14240) - 3029933..3030115 (+) 183 WP_269122564.1 YhfG family protein -
  OZ429_RS14245 (OZ429_14245) - 3030242..3030379 (+) 138 Protein_2681 cell filamentation protein Fic -
  OZ429_RS19650 - 3030507..3030665 (+) 159 WP_330873185.1 hypothetical protein -
  OZ429_RS14255 (OZ429_14255) pilB 3030756..3032492 (-) 1737 WP_269122565.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OZ429_RS14260 (OZ429_14260) pilA/pilAI 3032609..3033016 (-) 408 WP_208589544.1 pilin Machinery gene
  OZ429_RS14265 (OZ429_14265) pilA 3033091..3033501 (-) 411 WP_208589542.1 pilin Machinery gene
  OZ429_RS14270 (OZ429_14270) pilC 3033869..3035125 (+) 1257 WP_208591561.1 type II secretion system F family protein Machinery gene
  OZ429_RS14275 (OZ429_14275) - 3035133..3035996 (+) 864 WP_208589534.1 A24 family peptidase -
  OZ429_RS14280 (OZ429_14280) coaE 3036010..3036642 (+) 633 WP_208589532.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14237.59 Da        Isoelectric Point: 8.4936

>NTDB_id=764507 OZ429_RS14265 WP_208589542.1 3033091..3033501(-) (pilA) [Xanthomonas fragariae strain YLX21]
MKKQNGFTLIELMIVIAIIAILAAIALPMYQDYVAKSQVTAGLAEINPGKTQYEVALNEGKTAITGIGDLGLRSPTERCA
ITEITTLSATGTIVCTLKGNTQVKDKTVTLTRRTDGTWTCATTAAAKHAPAGCPGV

Nucleotide


Download         Length: 411 bp        

>NTDB_id=764507 OZ429_RS14265 WP_208589542.1 3033091..3033501(-) (pilA) [Xanthomonas fragariae strain YLX21]
ATGAAGAAGCAGAACGGTTTTACGCTGATCGAACTGATGATCGTTATTGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGATGTACCAGGACTATGTGGCCAAGTCGCAGGTGACAGCTGGCCTGGCTGAAATCAATCCTGGCAAGACGCAGTACG
AAGTTGCCTTGAACGAAGGCAAGACTGCTATCACCGGTATTGGTGATTTGGGCCTGCGCTCGCCGACTGAACGCTGTGCC
ATCACCGAAATCACGACGCTGAGCGCGACAGGTACGATTGTTTGCACCTTGAAGGGTAATACTCAGGTGAAGGACAAAAC
TGTCACTCTGACGCGTCGTACGGATGGTACTTGGACCTGCGCGACCACTGCTGCCGCCAAGCATGCGCCGGCAGGCTGCC
CGGGCGTCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

51.825

100

0.522
  pilA/pilAI Pseudomonas stutzeri DSM 10701

51.852

99.265

0.515
  pilA Pseudomonas aeruginosa PAK

41.216

100

0.449
  pilA2 Legionella pneumophila str. Paris

42.254

100

0.441
  pilA2 Legionella pneumophila strain ERS1305867

42.254

100

0.441
  pilA/pilAII Pseudomonas stutzeri DSM 10701

44.361

97.794

0.434
  pilA Vibrio cholerae strain A1552

41.844

100

0.434
  pilA Vibrio cholerae C6706

41.844

100

0.434
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

41.844

100

0.434
  comP Acinetobacter baylyi ADP1

38.514

100

0.419
  pilA/pilA1 Eikenella corrodens VA1

37.589

100

0.39
  pilA Haemophilus influenzae Rd KW20

35.915

100

0.375
  pilE Neisseria gonorrhoeae MS11

39.2

91.912

0.36