Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OZ429_RS14235 Genome accession   NZ_CP114134
Coordinates   3028411..3029859 (+) Length   482 a.a.
NCBI ID   WP_330873184.1    Uniprot ID   -
Organism   Xanthomonas fragariae strain YLX21     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3023411..3034859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ429_RS14215 (OZ429_14215) - 3023567..3023870 (-) 304 Protein_2675 DUF559 domain-containing protein -
  OZ429_RS14220 (OZ429_14220) sucD 3024115..3024990 (-) 876 WP_208589561.1 succinate--CoA ligase subunit alpha -
  OZ429_RS14225 (OZ429_14225) sucC 3025167..3026336 (-) 1170 WP_002812255.1 ADP-forming succinate--CoA ligase subunit beta -
  OZ429_RS14230 (OZ429_14230) - 3026569..3028182 (+) 1614 WP_269122562.1 HAMP domain-containing sensor histidine kinase -
  OZ429_RS14235 (OZ429_14235) pilR 3028411..3029859 (+) 1449 WP_330873184.1 sigma-54 dependent transcriptional regulator Regulator
  OZ429_RS14240 (OZ429_14240) - 3029933..3030115 (+) 183 WP_269122564.1 YhfG family protein -
  OZ429_RS14245 (OZ429_14245) - 3030242..3030379 (+) 138 Protein_2681 cell filamentation protein Fic -
  OZ429_RS19650 - 3030507..3030665 (+) 159 WP_330873185.1 hypothetical protein -
  OZ429_RS14255 (OZ429_14255) pilB 3030756..3032492 (-) 1737 WP_269122565.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OZ429_RS14260 (OZ429_14260) pilA/pilAI 3032609..3033016 (-) 408 WP_208589544.1 pilin Machinery gene
  OZ429_RS14265 (OZ429_14265) pilA 3033091..3033501 (-) 411 WP_208589542.1 pilin Machinery gene

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 52379.25 Da        Isoelectric Point: 7.1091

>NTDB_id=764504 OZ429_RS14235 WP_330873184.1 3028411..3029859(+) (pilR) [Xanthomonas fragariae strain YLX21]
MRPNPTDNCPLSSRWAIVRNMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKRYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPRPEQASRLL
GDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGSRAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAH
ADMPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSEMLVDVRILSATHKDLGDLVSDGRFRHDLYYRI
NVIELRVPPLRERGGDLPQLAAAIIARLAHGHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEADQINASDL
RLPAHGGHRLAAPPGSAAVEPREAVVDIDPAASALPSYIEQLERAAIKKALEENRWNKTKTAAQLGITFRALRYKLKKLG
ME

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=764504 OZ429_RS14235 WP_330873184.1 3028411..3029859(+) (pilR) [Xanthomonas fragariae strain YLX21]
TTGCGCCCGAACCCGACCGACAATTGTCCACTGTCGTCACGCTGGGCTATCGTGCGCAACATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGTATCAGCACCG
CCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGACCGACATGCGTCTGCCCGAC
GGCAACGGGATCGAACTGGTCACCGAGATCGCCAAGCGCTATCCGCAGACCCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGATCTGGCAGTGGAAGCCCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGTGGACATCAGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCACGGCCGGAACAGGCCAGCCGCCTGCTC
GGCGACTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCCCGCAGCCAGGCACCGGTCTACATCGTCGG
CGAATCGGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGATCACGCGCGGCCGGGCCGTTCGTCCCGG
TCAACTGCGGCGCCATTCCCGCCGAACTGATGGAGAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGGGCGCAT
GCCGACATGCCGGGCCTGTTCCAGGCCGCGCATGGCGGCACACTGTTTCTGGACGAAGTGGCCGAGTTGCCGCTGCAGAT
GCAGGTCAAACTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGCATCCAGCGAAATGCTGGTGGACGTGC
GCATCCTCTCGGCCACGCACAAGGATCTCGGCGACCTGGTTTCCGACGGCCGTTTTCGTCACGACCTGTACTACCGCATC
AACGTCATCGAACTGCGGGTTCCACCGCTGCGCGAACGCGGTGGCGACCTCCCGCAACTGGCCGCCGCAATCATCGCGCG
CCTGGCGCATGGCCATGGCCGCCCGATTCCGCTACTGACCCAATCCGCACTCGATGCGCTCGACCACTACGGCTTCCCCG
GCAACGTCCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGCCGACCAGATCAATGCCAGCGACCTG
CGCCTGCCCGCCCACGGCGGCCATCGTCTCGCCGCCCCCCCTGGCAGCGCCGCTGTCGAACCGCGCGAAGCCGTCGTCGA
CATCGACCCCGCCGCCTCTGCGCTACCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCAAGAAAGCCCTGGAAGAAA
ATCGCTGGAACAAGACCAAGACCGCCGCGCAACTGGGCATTACGTTCCGCGCGCTGCGCTACAAGCTCAAGAAGTTGGGG
ATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(439-479)

Sigma-54 interaction domain (Sigma54_activat)

(160-325)

Response regulator receiver domain (Response_reg)

(28-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.341

95.643

0.606
  pilR Acinetobacter baumannii strain A118

48.807

95.643

0.467