Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OZ429_RS14270 Genome accession   NZ_CP114134
Coordinates   3033869..3035125 (+) Length   418 a.a.
NCBI ID   WP_208591561.1    Uniprot ID   -
Organism   Xanthomonas fragariae strain YLX21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3028869..3040125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ429_RS14240 (OZ429_14240) - 3029933..3030115 (+) 183 WP_269122564.1 YhfG family protein -
  OZ429_RS14245 (OZ429_14245) - 3030242..3030379 (+) 138 Protein_2681 cell filamentation protein Fic -
  OZ429_RS19650 - 3030507..3030665 (+) 159 WP_330873185.1 hypothetical protein -
  OZ429_RS14255 (OZ429_14255) pilB 3030756..3032492 (-) 1737 WP_269122565.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OZ429_RS14260 (OZ429_14260) pilA/pilAI 3032609..3033016 (-) 408 WP_208589544.1 pilin Machinery gene
  OZ429_RS14265 (OZ429_14265) pilA 3033091..3033501 (-) 411 WP_208589542.1 pilin Machinery gene
  OZ429_RS14270 (OZ429_14270) pilC 3033869..3035125 (+) 1257 WP_208591561.1 type II secretion system F family protein Machinery gene
  OZ429_RS14275 (OZ429_14275) - 3035133..3035996 (+) 864 WP_208589534.1 A24 family peptidase -
  OZ429_RS14280 (OZ429_14280) coaE 3036010..3036642 (+) 633 WP_208589532.1 dephospho-CoA kinase -
  OZ429_RS14285 (OZ429_14285) - 3037675..3038888 (+) 1214 WP_269122570.1 IS3 family transposase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45508.83 Da        Isoelectric Point: 10.3013

>NTDB_id=764508 OZ429_RS14270 WP_208591561.1 3033869..3035125(+) (pilC) [Xanthomonas fragariae strain YLX21]
MAAVRSAVKSKPTSQVEQMSTFVWEGTDKRGVKMKGEQTSKNQNLLRAELRRQGITPTVVKAKPKPLFGAAGKKITAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQIRTDIEGGSSLHEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTIASYKENIEALKGKIKKALFYPAMVVAVALLVSAILLIFVVPQFEDVFKGFGAELPAFTQMIVNMSRFMVSWWWLI
LFVAIGAVVGFIFAYKRSPAMQHGMDRLILKVPIIGQVMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=764508 OZ429_RS14270 WP_208591561.1 3033869..3035125(+) (pilC) [Xanthomonas fragariae strain YLX21]
ATGGCAGCAGTGCGTAGTGCAGTCAAGAGCAAGCCGACCTCACAGGTCGAACAGATGAGCACGTTTGTCTGGGAGGGAAC
CGACAAGCGTGGCGTGAAGATGAAGGGTGAACAGACTTCCAAGAACCAAAACTTGCTACGTGCGGAGCTACGACGCCAGG
GGATCACGCCGACAGTAGTGAAAGCGAAACCCAAGCCTTTATTTGGCGCTGCTGGAAAGAAGATTACAGCGAAGGATATT
TCATTCTTCAGCCGGCAAATGGCAACCATGATGAAATCGGGCGTGCCTATCGTCGGCGCACTTGAAATCATTGGCAGTGG
CCAGAAAAATCCGCGTATGCGGAATATGGTCGGCCAGATCCGCACTGACATCGAGGGAGGCTCGTCGCTACACGAGGCGG
TAAGCAAGCATCCCGTTCAGTTCGACGAGTTGTACAGGAATTTGGTCAAGGCAGGCGAAGGCGCCGGCGTCCTTGAAACA
GTGCTCGACACAATTGCAAGCTACAAAGAAAACATCGAAGCGTTGAAAGGCAAAATCAAGAAGGCGCTGTTCTACCCGGC
GATGGTAGTCGCTGTGGCGCTACTGGTCAGTGCGATCTTGTTGATCTTTGTCGTGCCGCAATTCGAAGATGTCTTCAAGG
GCTTCGGCGCGGAACTTCCGGCATTTACACAGATGATCGTCAACATGTCGCGTTTCATGGTGTCGTGGTGGTGGTTGATC
CTGTTCGTTGCCATCGGTGCCGTCGTGGGCTTCATCTTTGCCTACAAACGCTCACCTGCAATGCAGCACGGCATGGATCG
CCTGATCCTCAAAGTGCCGATCATTGGGCAGGTCATGCACAACAGCTCTATCGCGCGTTTTGCCCGCACCACGGCCGTGA
CATTTAAAGCAGGCGTACCTTTAGTTGAGGCACTCGGCATCGTGGCTGGCGCTACAGGCAACTCTGTCTATGAGAAAGCG
GTACTTCGCATGCGCGAAGACGTATCTGTGGGATATCCCGTCAACGTGGCGATGAAGCAGGTCAACCTGTTCCCGCACAT
GGTGGTGCAGATGACCGCCATCGGCGAAGAGGCTGGTGCGTTAGACGCGATGCTGTTCAAGGTGGCAGAGTACTTCGAGC
AGGAAGTCAACAATGCGGTCGACGCACTGAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGT
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCCTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.518

95.215

0.51
  pilC Pseudomonas stutzeri DSM 10701

53.015

95.215

0.505
  pilC Acinetobacter baumannii D1279779

51.238

96.651

0.495
  pilC Acinetobacter baylyi ADP1

50.743

96.651

0.49
  pilG Neisseria gonorrhoeae MS11

44.389

95.933

0.426
  pilG Neisseria meningitidis 44/76-A

43.89

95.933

0.421
  pilC Vibrio cholerae strain A1552

40.741

96.89

0.395
  pilC Vibrio campbellii strain DS40M4

39.401

95.933

0.378
  pilC Thermus thermophilus HB27

37.717

96.411

0.364