Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   OZX61_RS08955 Genome accession   NZ_CP113932
Coordinates   1884031..1885068 (+) Length   345 a.a.
NCBI ID   WP_277094598.1    Uniprot ID   -
Organism   Acinetobacter sp. ESL0695     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1879031..1890068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX61_RS08945 (OZX61_08945) - 1881831..1883228 (-) 1398 WP_277094596.1 DHA2 family efflux MFS transporter permease subunit -
  OZX61_RS08950 (OZX61_08950) - 1883242..1883925 (-) 684 WP_277094597.1 YggS family pyridoxal phosphate-dependent enzyme -
  OZX61_RS08955 (OZX61_08955) pilT 1884031..1885068 (+) 1038 WP_277094598.1 type IV pilus twitching motility protein PilT Machinery gene
  OZX61_RS08960 (OZX61_08960) pilU 1885094..1886206 (+) 1113 WP_277095651.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  OZX61_RS08965 (OZX61_08965) fur 1886268..1886705 (-) 438 WP_195771109.1 ferric iron uptake transcriptional regulator -
  OZX61_RS08970 (OZX61_08970) - 1886814..1887197 (+) 384 WP_195771108.1 outer membrane protein assembly factor BamE -
  OZX61_RS08975 (OZX61_08975) - 1887261..1887575 (-) 315 WP_195771107.1 RnfH family protein -
  OZX61_RS08980 (OZX61_08980) - 1887576..1888658 (-) 1083 WP_277095652.1 hypothetical protein -
  OZX61_RS08985 (OZX61_08985) - 1888777..1889232 (-) 456 WP_195771106.1 bacteriohemerythrin -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38319.03 Da        Isoelectric Point: 6.7806

>NTDB_id=763621 OZX61_RS08955 WP_277094598.1 1884031..1885068(+) (pilT) [Acinetobacter sp. ESL0695]
MDITELLAFGVQHKASDLHLSAGLPPMIRVDGDVRRINLPALSHKEVHRLVYDIMNDQQRHDFEERLEIDFSFEVPNLSR
FRVNAFNQNRGAGAVFRTIPSKVLTLDDLGMGEIFKKLCDTPRGIILVTGQTGSGKSTTLAAMLDYINENRYEHILTIED
PIEFVHESKKCLINQREVHRDTHGFTPALRSALREDPDIILVGEMRDLETIRLALSAAETGHLVLGTLHTTSAAKTIDRI
VDVFPAEEKDMIRSMLSESLQAVISQTLLKKTGGGRVAAHEIMLGVPSIRNLIRENKVAQMYSAIQTGSAQGMITLDQSL
KKLVAQGLITKQAAQSAAKTPESFY

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=763621 OZX61_RS08955 WP_277094598.1 1884031..1885068(+) (pilT) [Acinetobacter sp. ESL0695]
ATGGACATTACAGAATTACTGGCGTTTGGTGTACAGCATAAAGCTTCTGACTTACACCTATCTGCAGGGTTGCCGCCAAT
GATTCGTGTAGATGGGGACGTAAGACGCATTAATTTACCTGCCCTTTCACACAAAGAAGTACATCGTCTTGTTTATGACA
TCATGAATGACCAACAACGACATGACTTTGAAGAACGTTTAGAAATTGATTTTTCGTTTGAAGTTCCAAACCTTTCTCGT
TTTCGTGTGAATGCTTTTAATCAAAATCGTGGTGCTGGGGCTGTATTTCGTACCATTCCTTCTAAAGTACTCACACTTGA
CGACTTAGGCATGGGAGAGATTTTTAAAAAGCTCTGCGATACTCCTCGTGGAATCATTTTAGTGACAGGACAAACAGGTT
CTGGTAAATCGACAACACTTGCAGCAATGCTCGACTATATTAATGAAAACCGCTACGAGCATATTTTAACTATTGAAGAT
CCAATCGAATTTGTACATGAATCAAAAAAATGCCTAATTAACCAACGTGAAGTACACCGCGACACACATGGGTTTACACC
TGCTCTACGTTCTGCATTGCGTGAAGATCCAGATATTATTCTTGTAGGTGAGATGCGTGATTTAGAAACAATCCGCTTAG
CACTAAGTGCTGCAGAGACGGGGCACCTTGTATTAGGTACACTCCATACGACCTCTGCTGCAAAAACGATTGACCGTATT
GTAGATGTCTTCCCAGCAGAAGAAAAAGATATGATTCGTTCAATGCTTTCTGAGTCATTACAAGCTGTTATTTCACAAAC
ATTACTGAAAAAAACAGGCGGTGGTCGTGTAGCTGCCCACGAAATTATGCTTGGTGTTCCATCAATTCGTAACCTTATTC
GTGAAAATAAAGTTGCTCAAATGTATTCGGCAATACAAACAGGCTCAGCACAAGGCATGATTACACTTGATCAGAGTCTA
AAAAAACTCGTTGCCCAAGGTCTGATTACTAAACAGGCAGCACAATCCGCTGCTAAAACTCCTGAATCATTCTATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii strain A118

84.884

99.71

0.846
  pilT Acinetobacter baumannii D1279779

84.884

99.71

0.846
  pilT Acinetobacter nosocomialis M2

84.593

99.71

0.843
  pilT Acinetobacter baylyi ADP1

81.395

99.71

0.812
  pilT Pseudomonas aeruginosa PAK

80.814

99.71

0.806
  pilT Pseudomonas stutzeri DSM 10701

80.814

99.71

0.806
  pilT Legionella pneumophila strain Lp02

71.598

97.971

0.701
  pilT Legionella pneumophila strain ERS1305867

71.598

97.971

0.701
  pilT Neisseria gonorrhoeae MS11

67.246

100

0.672
  pilT Neisseria meningitidis 8013

67.246

100

0.672
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

68.75

97.391

0.67
  pilT Vibrio cholerae strain A1552

68.75

97.391

0.67
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.725

100

0.507
  pilU Vibrio cholerae strain A1552

41.349

98.841

0.409
  pilU Pseudomonas stutzeri DSM 10701

41.194

97.101

0.4
  pilU Acinetobacter baylyi ADP1

39.306

100

0.394