Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   OTU47_RS04730 Genome accession   NZ_CP113115
Coordinates   871430..872926 (+) Length   498 a.a.
NCBI ID   WP_000759900.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 866430..877926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU47_RS04720 (OTU47_04720) - 867559..868905 (-) 1347 WP_001826500.1 IS1380-like element ISSpn5 family transposase -
  OTU47_RS04725 (OTU47_04725) amiA3 869384..871363 (+) 1980 WP_000742233.1 peptide ABC transporter substrate-binding protein Regulator
  OTU47_RS04730 (OTU47_04730) amiC 871430..872926 (+) 1497 WP_000759900.1 ABC transporter permease Regulator
  OTU47_RS04735 (OTU47_04735) amiD 872926..873852 (+) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  OTU47_RS04740 (OTU47_04740) amiE 873861..874928 (+) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  OTU47_RS04745 (OTU47_04745) amiF 874939..875865 (+) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  OTU47_RS04750 (OTU47_04750) - 875940..877266 (-) 1327 Protein_884 ISL3 family transposase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55707.33 Da        Isoelectric Point: 9.4436

>NTDB_id=760429 OTU47_RS04730 WP_000759900.1 871430..872926(+) (amiC) [Streptococcus pneumoniae strain NP2]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTLVPRKLIFKQDPNYNKIATTADKRDNYENTVFERMGYIEYYDTKELQEKAS
SMDSSVTVEANATNKAIYEKYINQLGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTAQVQFPTGKKTSSV
NIYSRIYKSPSQADSREVASYGKDDPYTATESNYQYPSMIVSSAITGLIGLVLAYALAVPLGSAMARFKNTWIDSLSTGT
LTFLLALPTIALVYIVRLIGSSIALPDSFPILGAGDWRSYVLPAVILGLLGAPLTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSRLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=760429 OTU47_RS04730 WP_000759900.1 871430..872926(+) (amiC) [Streptococcus pneumoniae strain NP2]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCATTGGTTTCGATTTTCTTAGTAACGACTTTGACCTACACGATTAT
CTATACCTTGGTTCCTCGAAAATTGATTTTCAAGCAGGATCCTAACTATAATAAAATTGCGACAACGGCTGATAAACGTG
ATAACTATGAAAATACTGTGTTTGAGCGTATGGGCTACATTGAGTATTACGATACTAAAGAGTTGCAAGAAAAGGCAAGT
AGCATGGATTCTTCTGTAACAGTAGAAGCAAATGCGACCAATAAAGCTATTTATGAAAAGTACATCAATCAATTAGGTCA
TGGTTGGACTTTGGGAGAATTTACTGAAAGTGGTCAATTCTATGCTACTCGTGAAATTCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGACATTGACCATACAAATAAAATCCAAGACCCTGAAAATCCAGACTTGAAACGCTACCTT
CGTTTTGAAAATGATCCAGCTATCGGATGGTCATTGGTCGGTTCAGGAACTAAACATAAATATCTCTTGTACTTTAACAG
TCAGTTCCCATTTGTTCATCAAAACTTTGTGAACTTGAATTTAGGTGACTCTTACCCAACCTATGCTAATACACCAGTTC
TTCAGGTTATTACTCAAGGTCAAGGACAAACCAAAACTGCCCAAGTTCAGTTCCCAACAGGTAAGAAAACGTCTTCTGTA
AATATTTACTCAAGAATCTACAAGTCACCTAGTCAGGCTGACTCTCGTGAAGTAGCTAGCTATGGGAAAGATGATCCTTA
TACAGCGACTGAAAGTAATTACCAATATCCATCTATGATTGTCAGCTCTGCTATTACTGGTTTGATTGGTTTGGTTCTTG
CCTATGCTCTTGCCGTGCCACTTGGTTCAGCCATGGCTCGTTTCAAGAACACTTGGATTGATAGCCTCTCAACAGGGACT
TTGACCTTCTTGCTTGCTCTTCCAACGATTGCCTTGGTTTACATCGTTCGATTGATTGGATCATCTATTGCCCTTCCAGA
TTCATTCCCTATCTTGGGAGCTGGAGATTGGCGTTCTTACGTTTTACCAGCAGTCATCCTTGGTTTGTTGGGTGCTCCTC
TTACAGCCATTTGGATTCGTCGTTACATGATTGACTTGCAATCTCAAGACTTTGTTCGTTTCGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCCATTAT
TGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACGTCTTTTGGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767
  amiC Streptococcus thermophilus LMG 18311

76.506

100

0.765
  amiC Streptococcus thermophilus LMD-9

76.104

100

0.761