Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   OSH16_RS02285 Genome accession   NZ_CP113072
Coordinates   474030..474914 (+) Length   294 a.a.
NCBI ID   WP_032031441.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469030..479914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH16_RS02260 (OSH16_02260) - 469428..470675 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  OSH16_RS02265 (OSH16_02265) wrbA 470963..471556 (+) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  OSH16_RS02270 (OSH16_02270) - 471609..472184 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  OSH16_RS02275 (OSH16_02275) - 472257..472970 (-) 714 WP_000201544.1 DUF3108 domain-containing protein -
  OSH16_RS02280 (OSH16_02280) - 473128..473799 (-) 672 WP_001193955.1 hypothetical protein -
  OSH16_RS02285 (OSH16_02285) tonB2 474030..474914 (+) 885 WP_032031441.1 energy transducer TonB Machinery gene
  OSH16_RS02290 (OSH16_02290) ybeY 475004..475480 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  OSH16_RS02295 (OSH16_02295) - 475490..476578 (-) 1089 WP_000122983.1 PhoH family protein -
  OSH16_RS02300 (OSH16_02300) miaB 476616..478067 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33680.56 Da        Isoelectric Point: 9.0935

>NTDB_id=759814 OSH16_RS02285 WP_032031441.1 474030..474914(+) (tonB2) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPTPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=759814 OSH16_RS02285 WP_032031441.1 474030..474914(+) (tonB2) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCATCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAACGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGCCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCATTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993