Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | UABAM_RS32195 | Genome accession | NZ_AP019860 |
| Coordinates | 9152551..9153627 (+) | Length | 358 a.a. |
| NCBI ID | WP_151972286.1 | Uniprot ID | A0A5S9IUD4 |
| Organism | Candidatus Uabimicrobium amorphum strain SRT547 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 9147551..9158627
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UABAM_RS32190 (UABAM_06519) | fusA | 9150472..9152469 (+) | 1998 | WP_173013702.1 | elongation factor G | - |
| UABAM_RS32195 (UABAM_06520) | pilT | 9152551..9153627 (+) | 1077 | WP_151972286.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| UABAM_RS32200 (UABAM_06521) | - | 9153658..9154875 (+) | 1218 | WP_151972288.1 | type II secretion system F family protein | - |
| UABAM_RS32205 (UABAM_06522) | - | 9155005..9156663 (+) | 1659 | WP_173013703.1 | nitrogen regulation protein NR(II) | - |
| UABAM_RS32210 (UABAM_06523) | - | 9156669..9158003 (+) | 1335 | WP_151972292.1 | sigma-54 dependent transcriptional regulator | - |
Sequence
Protein
Download Length: 358 a.a. Molecular weight: 40024.17 Da Isoelectric Point: 5.8514
>NTDB_id=74493 UABAM_RS32195 WP_151972286.1 9152551..9153627(+) (pilT) [Candidatus Uabimicrobium amorphum strain SRT547]
MLPSSIEELTQVLVEKGGSDLHLSAGSKPRVRIDGELVETDYDVLDPETTQRLMYAILDDEQIARFEKDWELDLSFGIQG
LGRFRTNVFLQRGAVGGVLRVIPYEILTFKDLGLPENVCKRLCALPKGLVLVTGATGSGKSTTLASMINHINETRAEHIM
TIEDPIEFVHPNKACLVNQREIGGDTHGFKYALRTVLRQDPDIVLVGEMRDLETIEAALTVAETGHLTFATLHTTDCPQT
INRIVDVFPAYQQAQILTQLSFVLQGVFCQQLLPHVSGRGRVLASEIMIATPALRNMIREKRIEQIKGLIQTGGKFGMTT
MNQSLFDLVDKKLVTKDEALLRSTDPEDLHRQFMKWNK
MLPSSIEELTQVLVEKGGSDLHLSAGSKPRVRIDGELVETDYDVLDPETTQRLMYAILDDEQIARFEKDWELDLSFGIQG
LGRFRTNVFLQRGAVGGVLRVIPYEILTFKDLGLPENVCKRLCALPKGLVLVTGATGSGKSTTLASMINHINETRAEHIM
TIEDPIEFVHPNKACLVNQREIGGDTHGFKYALRTVLRQDPDIVLVGEMRDLETIEAALTVAETGHLTFATLHTTDCPQT
INRIVDVFPAYQQAQILTQLSFVLQGVFCQQLLPHVSGRGRVLASEIMIATPALRNMIREKRIEQIKGLIQTGGKFGMTT
MNQSLFDLVDKKLVTKDEALLRSTDPEDLHRQFMKWNK
Nucleotide
Download Length: 1077 bp
>NTDB_id=74493 UABAM_RS32195 WP_151972286.1 9152551..9153627(+) (pilT) [Candidatus Uabimicrobium amorphum strain SRT547]
ATGCTTCCTTCTAGCATTGAAGAATTAACACAAGTTCTCGTAGAAAAAGGTGGATCAGACCTTCATTTATCTGCTGGATC
AAAGCCACGTGTTCGTATAGATGGTGAGTTGGTGGAGACAGATTATGATGTGCTTGATCCAGAAACGACACAAAGATTAA
TGTATGCGATCCTTGATGACGAACAAATTGCTCGTTTTGAAAAAGATTGGGAGCTGGATTTATCATTTGGTATCCAAGGT
TTAGGTCGTTTTCGTACGAATGTTTTTTTACAACGTGGAGCTGTAGGCGGAGTTTTGCGGGTTATTCCGTATGAAATATT
GACTTTCAAAGATCTCGGTTTACCTGAAAACGTTTGCAAAAGATTATGCGCACTGCCAAAAGGTTTGGTACTGGTTACTG
GTGCTACAGGTAGTGGTAAATCAACTACTCTTGCCTCTATGATCAACCACATTAATGAGACTCGTGCAGAACATATTATG
ACGATTGAAGACCCTATTGAATTTGTCCACCCGAACAAAGCTTGCTTAGTAAATCAGCGAGAAATTGGTGGAGATACTCA
TGGTTTTAAGTATGCACTACGTACTGTGTTGCGTCAAGATCCCGACATTGTTCTTGTAGGGGAAATGCGCGATTTGGAAA
CAATTGAAGCGGCGCTAACTGTTGCGGAAACAGGGCACTTAACTTTTGCGACACTTCACACCACTGACTGTCCGCAAACT
ATCAACCGTATTGTTGACGTATTTCCTGCATACCAACAAGCACAAATACTTACACAGCTCTCTTTTGTACTTCAGGGAGT
TTTTTGCCAACAACTCTTGCCTCATGTTTCTGGTAGAGGACGTGTACTTGCTTCAGAAATTATGATTGCTACACCAGCGT
TACGCAATATGATTCGTGAAAAAAGAATTGAACAGATAAAAGGTCTTATCCAAACAGGTGGAAAGTTTGGAATGACGACG
ATGAACCAATCCTTATTCGATTTAGTAGACAAGAAATTAGTTACCAAAGACGAAGCTCTATTACGAAGTACAGATCCTGA
AGATCTGCATCGACAGTTTATGAAATGGAATAAATAG
ATGCTTCCTTCTAGCATTGAAGAATTAACACAAGTTCTCGTAGAAAAAGGTGGATCAGACCTTCATTTATCTGCTGGATC
AAAGCCACGTGTTCGTATAGATGGTGAGTTGGTGGAGACAGATTATGATGTGCTTGATCCAGAAACGACACAAAGATTAA
TGTATGCGATCCTTGATGACGAACAAATTGCTCGTTTTGAAAAAGATTGGGAGCTGGATTTATCATTTGGTATCCAAGGT
TTAGGTCGTTTTCGTACGAATGTTTTTTTACAACGTGGAGCTGTAGGCGGAGTTTTGCGGGTTATTCCGTATGAAATATT
GACTTTCAAAGATCTCGGTTTACCTGAAAACGTTTGCAAAAGATTATGCGCACTGCCAAAAGGTTTGGTACTGGTTACTG
GTGCTACAGGTAGTGGTAAATCAACTACTCTTGCCTCTATGATCAACCACATTAATGAGACTCGTGCAGAACATATTATG
ACGATTGAAGACCCTATTGAATTTGTCCACCCGAACAAAGCTTGCTTAGTAAATCAGCGAGAAATTGGTGGAGATACTCA
TGGTTTTAAGTATGCACTACGTACTGTGTTGCGTCAAGATCCCGACATTGTTCTTGTAGGGGAAATGCGCGATTTGGAAA
CAATTGAAGCGGCGCTAACTGTTGCGGAAACAGGGCACTTAACTTTTGCGACACTTCACACCACTGACTGTCCGCAAACT
ATCAACCGTATTGTTGACGTATTTCCTGCATACCAACAAGCACAAATACTTACACAGCTCTCTTTTGTACTTCAGGGAGT
TTTTTGCCAACAACTCTTGCCTCATGTTTCTGGTAGAGGACGTGTACTTGCTTCAGAAATTATGATTGCTACACCAGCGT
TACGCAATATGATTCGTGAAAAAAGAATTGAACAGATAAAAGGTCTTATCCAAACAGGTGGAAAGTTTGGAATGACGACG
ATGAACCAATCCTTATTCGATTTAGTAGACAAGAAATTAGTTACCAAAGACGAAGCTCTATTACGAAGTACAGATCCTGA
AGATCTGCATCGACAGTTTATGAAATGGAATAAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
52.035 |
96.089 |
0.5 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.445 |
96.648 |
0.497 |
| pilT | Acinetobacter nosocomialis M2 |
51.744 |
96.089 |
0.497 |
| pilT | Pseudomonas stutzeri DSM 10701 |
51.744 |
96.089 |
0.497 |
| pilT | Acinetobacter baumannii strain A118 |
51.744 |
96.089 |
0.497 |
| pilT | Acinetobacter baumannii D1279779 |
51.744 |
96.089 |
0.497 |
| pilT | Acinetobacter baylyi ADP1 |
51.453 |
96.089 |
0.494 |
| pilT | Legionella pneumophila strain ERS1305867 |
51.497 |
93.296 |
0.48 |
| pilT | Legionella pneumophila strain Lp02 |
51.497 |
93.296 |
0.48 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.85 |
93.017 |
0.464 |
| pilT | Vibrio cholerae strain A1552 |
49.85 |
93.017 |
0.464 |
| pilT | Neisseria meningitidis 8013 |
47.447 |
93.017 |
0.441 |
| pilT | Neisseria gonorrhoeae MS11 |
45.64 |
96.089 |
0.439 |
| pilU | Vibrio cholerae strain A1552 |
40.87 |
96.369 |
0.394 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.988 |
96.089 |
0.394 |
| pilU | Acinetobacter baylyi ADP1 |
40.173 |
96.648 |
0.388 |