Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6J79_RS08430 Genome accession   NZ_AP024555
Coordinates   1804500..1805114 (+) Length   204 a.a.
NCBI ID   WP_000580359.1    Uniprot ID   Q9KR01
Organism   Vibrio cholerae strain IDH-03506     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1799500..1810114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J79_RS08405 - 1799684..1800898 (-) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -
  K6J79_RS08410 lpxH 1800994..1801734 (-) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  K6J79_RS08415 - 1801775..1802269 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  K6J79_RS08420 cysS 1802415..1803794 (+) 1380 WP_000913180.1 cysteine--tRNA ligase -
  K6J79_RS08425 ruvC 1803882..1804403 (+) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  K6J79_RS08430 ruvA 1804500..1805114 (+) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J79_RS08435 ruvB 1805170..1806174 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J79_RS08440 cydA 1806633..1808219 (+) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  K6J79_RS08445 cydB 1808237..1809373 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  K6J79_RS08450 cydX 1809386..1809493 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  K6J79_RS08455 ybgE 1809486..1809803 (+) 318 WP_001286617.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22008.70 Da        Isoelectric Point: 5.0954

>NTDB_id=73177 K6J79_RS08430 WP_000580359.1 1804500..1805114(+) (ruvA) [Vibrio cholerae strain IDH-03506]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=73177 K6J79_RS08430 WP_000580359.1 1804500..1805114(+) (ruvA) [Vibrio cholerae strain IDH-03506]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGACCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATTCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363

Multiple sequence alignment