Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   NYP10_RS19480 Genome accession   NZ_CP104471
Coordinates   3816476..3817456 (-) Length   326 a.a.
NCBI ID   WP_045332866.1    Uniprot ID   A0A837FII0
Organism   Enterobacter hormaechei strain 80014967     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3811476..3822456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYP10_RS19450 (NYP10_19460) - 3812353..3812850 (+) 498 WP_003860035.1 SprT family zinc-dependent metalloprotease -
  NYP10_RS19455 (NYP10_19465) endA 3812945..3813652 (+) 708 WP_022651828.1 deoxyribonuclease I -
  NYP10_RS19460 (NYP10_19470) rsmE 3813704..3814435 (+) 732 WP_022651829.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  NYP10_RS19465 (NYP10_19475) gshB 3814467..3815414 (+) 948 WP_003860032.1 glutathione synthase -
  NYP10_RS19470 (NYP10_19480) - 3815489..3816049 (+) 561 WP_003860031.1 YqgE/AlgH family protein -
  NYP10_RS19475 (NYP10_19485) ruvX 3816049..3816465 (+) 417 WP_003860030.1 Holliday junction resolvase RuvX -
  NYP10_RS19480 (NYP10_19490) pilT 3816476..3817456 (-) 981 WP_045332866.1 type IV pilus twitching motility protein PilT Machinery gene
  NYP10_RS19485 (NYP10_19495) - 3817474..3818175 (+) 702 WP_047053922.1 YggS family pyridoxal phosphate-dependent enzyme -
  NYP10_RS19490 (NYP10_19500) - 3818197..3818763 (+) 567 WP_003860024.1 YggT family protein -
  NYP10_RS19495 (NYP10_19505) yggU 3818760..3819056 (+) 297 WP_003860023.1 DUF167 family protein YggU -
  NYP10_RS19500 (NYP10_19510) - 3819060..3819653 (+) 594 WP_022651831.1 XTP/dITP diphosphatase -
  NYP10_RS19505 (NYP10_19515) hemW 3819646..3820794 (+) 1149 WP_047053920.1 radical SAM family heme chaperone HemW -
  NYP10_RS19510 (NYP10_19520) - 3820851..3821213 (+) 363 WP_047053919.1 DUF559 domain-containing protein -
  NYP10_RS19515 (NYP10_19525) - 3821326..3822042 (-) 717 WP_003862419.1 DUF2884 domain-containing protein -
  NYP10_RS19520 (NYP10_19530) - 3822100..3822426 (-) 327 WP_003862421.1 YggL family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35749.75 Da        Isoelectric Point: 6.2344

>NTDB_id=729793 NYP10_RS19480 WP_045332866.1 3816476..3817456(-) (pilT) [Enterobacter hormaechei strain 80014967]
MDVEEIVALSVKHNVSDLHLCSDSPPRWRRSGRLEPAPFPPPDVEALLKAWLNDEQQGAWWANGQVDFAVTLADRQRLRG
SAFKHMHGVSIALRLLPLTCPQLSALGVPRAIPELLSNDNGLILVTGATGSGKSTTLAAMVDFLNHQTDGHILTLEDPVE
FMYQSERCLIQQREIGLHSPSFAEALRSALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAIERLVDT
FPAQEKDPVRNQLAGSLRAVLAQKLRQDVQGGRVALYELLVNTSAAANLIREGKTWQLPGIIQTGQQAGMQNFEQSLAER
RAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=729793 NYP10_RS19480 WP_045332866.1 3816476..3817456(-) (pilT) [Enterobacter hormaechei strain 80014967]
ATGGATGTGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCCGATCTACACCTGTGCAGTGATTCACCTCCGCG
CTGGCGCAGGTCAGGCCGTCTTGAACCTGCGCCGTTTCCACCCCCGGATGTGGAGGCGTTATTAAAAGCGTGGCTCAACG
ATGAACAGCAGGGCGCCTGGTGGGCAAATGGGCAGGTTGATTTTGCCGTTACCCTCGCAGACCGTCAGCGGCTGCGCGGC
AGTGCGTTTAAGCATATGCACGGCGTTTCGATCGCGCTGCGCCTGTTGCCGCTGACGTGCCCGCAGCTCTCTGCGTTAGG
TGTGCCGCGAGCGATCCCGGAGCTTTTGTCCAATGACAATGGCCTGATTCTGGTCACCGGCGCCACCGGCAGTGGGAAAT
CGACCACCCTGGCCGCGATGGTCGATTTCCTCAATCACCAGACGGACGGGCATATTCTGACCCTGGAAGATCCGGTGGAG
TTTATGTACCAGAGTGAACGTTGCCTGATCCAGCAGCGGGAGATAGGCCTGCACAGCCCGTCCTTTGCCGAGGCCCTGCG
CAGCGCTCTGCGTGAAGATCCGGATGTGATTCTGCTTGGTGAGCTGCGCGACAGCGAGACGATACGCCTGGCGCTGACGG
CGGCGGAAACCGGCCATCTGGTGTTGGCCACGCTGCACACGCGCGGTGCGGCGCAGGCGATCGAGCGCCTGGTCGATACC
TTTCCGGCGCAGGAGAAAGATCCGGTGCGTAATCAACTGGCGGGAAGCCTGCGTGCGGTTCTGGCGCAGAAGCTGCGTCA
GGATGTCCAGGGCGGGCGCGTGGCGCTGTATGAGCTACTGGTGAATACCTCGGCGGCGGCAAACCTGATCCGCGAAGGCA
AAACCTGGCAACTGCCGGGCATTATTCAAACGGGGCAGCAGGCGGGGATGCAGAACTTTGAGCAGAGTCTGGCGGAGCGA
CGGGCGCAGGGGCGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(75-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837FII0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

50.459

100

0.506
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.459

100

0.506
  pilT Legionella pneumophila strain ERS1305867

48.758

98.773

0.482
  pilT Legionella pneumophila strain Lp02

48.758

98.773

0.482
  pilT Pseudomonas stutzeri DSM 10701

47.706

100

0.479
  pilT Neisseria meningitidis 8013

47.256

100

0.475
  pilT Acinetobacter baumannii strain A118

47.095

100

0.472
  pilT Acinetobacter baumannii D1279779

47.095

100

0.472
  pilT Neisseria gonorrhoeae MS11

46.951

100

0.472
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Pseudomonas aeruginosa PAK

46.789

100

0.469
  pilT Acinetobacter nosocomialis M2

47.5

98.16

0.466
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.653

99.08

0.433
  pilU Pseudomonas stutzeri DSM 10701

37.879

100

0.383
  pilU Vibrio cholerae strain A1552

38.509

98.773

0.38
  pilB Haemophilus influenzae 86-028NP

33.146

100

0.362