Detailed information NTG0720166

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: NVV94_RS01945
• Genome accession: NZ_CP102951
• Coordinates: 401908..402972 (+)
• Length: 354 a.a.
• NCBI ID: WP_258445583.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LS1212
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 396908..407972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NVV94_RS01925 (NVV94_01925)	-	397290..397964 (+)	675	WP_258445580.1	urease accessory protein UreF	-
NVV94_RS01930 (NVV94_01930)	ureG	397975..398589 (+)	615	WP_258445581.1	urease accessory protein UreG	-
NVV94_RS01935 (NVV94_01935)	-	398615..399187 (+)	573	WP_258445582.1	HupE/UreJ family protein	-
NVV94_RS01940 (NVV94_01940)	-	399303..401723 (-)	2421	WP_258447599.1	penicillin-binding protein 1A	-
NVV94_RS01945 (NVV94_01945)	pilM	401908..402972 (+)	1065	WP_258445583.1	pilus assembly protein PilM	Machinery gene
NVV94_RS01950 (NVV94_01950)	-	402972..403538 (+)	567	WP_258445584.1	PilN domain-containing protein	-
NVV94_RS01955 (NVV94_01955)	-	403535..404158 (+)	624	WP_258445585.1	type 4a pilus biogenesis protein PilO	-
NVV94_RS01960 (NVV94_01960)	-	404155..404682 (+)	528	WP_258445586.1	pilus assembly protein PilP	-
NVV94_RS01965 (NVV94_01965)	pilQ	404714..406768 (+)	2055	WP_258445587.1	type IV pilus secretin PilQ	Machinery gene
NVV94_RS01970 (NVV94_01970)	aroK	406773..407291 (+)	519	WP_258445588.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37692.36 Da
• Isoelectric Point: 5.0035

>NTDB_id=720166 NVV94_RS01945 WP_258445583.1 401908..402972(+) (pilM) [Pseudomonas sp. LS1212]
MLGLLGRKARSLVGIDISSTSVKLIELSLAGGRFKVEAYAVEPLPSGAVVDRNIAEPERVGQALARARAKARSTARHASV
AVAGSAVITKIIELQAGLNDDEMEIQVKVEADQYIPYPLEEVAIDFEVQGLSLRSPDRVEVLLAACRKESVEVREAALAL
AGLTARVVDIEAFALERACALLTPHEASDQGASVVALVDIGATTTTLSVLRSGRIIYTREQLFGGRQLTEAIQRRYGLSV
EEAGLAKKQGGLPDDYPGEVLQPFMEAVAQQISRSLQFFFAAGQFHKVDCILLAGGTALLSGLDHLVQQRLTTATLLANP
FADMTISSRIDATALVSDAPALMIACGLALRGFD

Nucleotide

• Length: 1065 bp

>NTDB_id=720166 NVV94_RS01945 WP_258445583.1 401908..402972(+) (pilM) [Pseudomonas sp. LS1212]
GTGCTTGGACTCCTCGGCAGGAAAGCTCGTTCACTTGTAGGGATCGATATCAGCTCCACCTCGGTAAAGCTCATTGAGCT
CAGTCTGGCCGGCGGCCGCTTCAAGGTGGAGGCCTACGCCGTAGAGCCGTTGCCGTCGGGCGCCGTCGTCGATAGGAACA
TCGCTGAACCGGAGCGCGTGGGCCAGGCGTTGGCCAGGGCTCGGGCCAAGGCGCGCTCAACTGCCAGGCATGCCTCGGTG
GCTGTTGCAGGCTCTGCCGTGATCACCAAGATCATCGAGCTGCAAGCGGGCCTCAACGATGATGAGATGGAAATCCAGGT
CAAGGTTGAAGCCGATCAATACATCCCCTATCCGCTCGAAGAGGTGGCAATCGATTTCGAGGTCCAGGGGTTGTCCCTGC
GTAGCCCTGATCGGGTCGAGGTGCTGTTGGCCGCTTGCCGCAAGGAAAGCGTCGAGGTCCGCGAGGCGGCGCTGGCACTG
GCCGGCCTGACGGCGCGAGTGGTGGATATCGAGGCCTTTGCGCTGGAGCGGGCCTGCGCGCTCCTTACGCCGCACGAGGC
CAGCGACCAGGGTGCCTCGGTTGTTGCGCTGGTTGATATCGGTGCGACCACGACAACACTGAGCGTTCTGCGCAGCGGCA
GGATCATTTACACCCGTGAGCAGCTGTTCGGTGGCAGGCAACTGACCGAAGCGATCCAGCGCCGCTATGGCCTGTCGGTC
GAAGAGGCCGGGCTTGCGAAAAAGCAGGGCGGGCTGCCTGATGACTACCCTGGCGAAGTCCTGCAGCCGTTCATGGAAGC
GGTAGCCCAGCAAATTTCGCGCTCGTTGCAGTTTTTCTTTGCCGCCGGGCAATTCCACAAGGTCGACTGCATTCTGCTGG
CCGGCGGCACAGCTTTGCTGAGCGGGCTCGACCATCTGGTCCAGCAGCGCCTGACCACGGCGACCCTGCTGGCCAACCCC
TTTGCCGATATGACCATCAGTAGCAGAATCGACGCCACGGCGCTGGTCAGCGATGCGCCGGCCCTGATGATCGCCTGCGG
GCTGGCGCTGAGGGGGTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Acinetobacter baumannii D1279779	52.26	100	0.523
comM	Acinetobacter nosocomialis M2	51.977	100	0.52
comM	Acinetobacter baylyi ADP1	50	100	0.5
pilM	Legionella pneumophila strain ERS1305867	43.305	99.153	0.429