Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   NUG39_RS04715 Genome accession   NZ_CP102500
Coordinates   965033..966013 (-) Length   326 a.a.
NCBI ID   WP_257748852.1    Uniprot ID   -
Organism   Citrobacter youngae strain CF10     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 960033..971013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUG39_RS04685 (NUG39_04685) - 960880..961377 (+) 498 WP_200037729.1 SprT family zinc-dependent metalloprotease -
  NUG39_RS04690 (NUG39_04690) endA 961472..962179 (+) 708 WP_016150969.1 deoxyribonuclease I -
  NUG39_RS04695 (NUG39_04695) rsmE 962254..962985 (+) 732 WP_121585035.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  NUG39_RS04700 (NUG39_04700) gshB 962998..963945 (+) 948 WP_003027083.1 glutathione synthase -
  NUG39_RS04705 (NUG39_04705) - 964057..964620 (+) 564 WP_048213499.1 YqgE/AlgH family protein -
  NUG39_RS04710 (NUG39_04710) ruvX 964620..965036 (+) 417 WP_006686843.1 Holliday junction resolvase RuvX -
  NUG39_RS04715 (NUG39_04715) pilT 965033..966013 (-) 981 WP_257748852.1 type IV pilus twitching motility protein PilT Machinery gene
  NUG39_RS04720 (NUG39_04720) - 966031..966201 (+) 171 Protein_928 YggS family pyridoxal phosphate enzyme -
  NUG39_RS04725 (NUG39_04725) - 966207..966626 (-) 420 WP_048213194.1 DUF3828 domain-containing protein -
  NUG39_RS04730 (NUG39_04730) - 966626..966985 (-) 360 WP_061068548.1 hypothetical protein -
  NUG39_RS04735 (NUG39_04735) - 967338..967463 (-) 126 Protein_931 type IV pili twitching motility protein PilT -
  NUG39_RS04740 (NUG39_04740) - 967481..968185 (+) 705 WP_115601488.1 YggS family pyridoxal phosphate-dependent enzyme -
  NUG39_RS04745 (NUG39_04745) - 968204..968770 (+) 567 WP_003825417.1 YggT family protein -
  NUG39_RS04750 (NUG39_04750) yggU 968767..969057 (+) 291 WP_101700214.1 DUF167 family protein YggU -
  NUG39_RS04755 (NUG39_04755) - 969065..969658 (+) 594 WP_115642890.1 XTP/dITP diphosphatase -
  NUG39_RS04760 (NUG39_04760) hemW 969651..970787 (+) 1137 WP_257748853.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36029.04 Da        Isoelectric Point: 6.2788

>NTDB_id=717329 NUG39_RS04715 WP_257748852.1 965033..966013(-) (pilT) [Citrobacter youngae strain CF10]
MNMEEIVALSVKHNVSDLHLCNAWPARWRRHGKIENAPFTAPDVENLLMCWLSEQQQVQWREQGQVDFAVTLTDSRRLRA
SAFAHQQGTSLALRLLPLDCPHLDDLQTPEAIPELLRSENGLILVTGATGSGKSTTLAAMVEYLNQHIEGHILTLEDPIE
YRYASQRCLIQQREVGVHCVSFAAGLRGALREDPDVILLGELRDVETIRLALTAAETGHLVLATLHTRGAAQAIARLVDS
FAATEKDPVRNQLADSLRAVLSQKLEEDKQGGRVALFELLVNTPAVGNLIREGKTHQLPGVIQTGQQTGMQTFAQSLQQR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=717329 NUG39_RS04715 WP_257748852.1 965033..966013(-) (pilT) [Citrobacter youngae strain CF10]
ATGAATATGGAAGAAATAGTGGCCCTTAGTGTAAAGCATAACGTGTCGGATCTACACCTGTGCAATGCATGGCCCGCGCG
TTGGCGCAGACATGGAAAAATCGAAAATGCGCCGTTTACCGCGCCTGACGTAGAGAATCTGCTGATGTGCTGGCTCAGTG
AGCAACAACAGGTACAGTGGCGGGAGCAAGGGCAGGTTGATTTTGCCGTTACCCTGACGGACTCCCGGCGGCTGCGCGCC
AGCGCATTTGCCCATCAGCAAGGAACGTCACTGGCGCTAAGACTGCTACCGCTGGATTGTCCTCATTTAGACGATCTCCA
GACTCCCGAGGCCATACCTGAACTGTTGCGCAGTGAAAATGGGTTAATTCTGGTGACAGGCGCCACCGGCAGCGGTAAAT
CTACGACCCTGGCGGCGATGGTGGAGTATCTTAATCAGCATATTGAGGGACACATTCTGACGCTGGAAGATCCTATTGAA
TACCGCTACGCCAGCCAGCGTTGTCTCATTCAACAGCGGGAGGTGGGCGTACACTGCGTCTCTTTCGCCGCCGGTTTGCG
CGGTGCGTTACGCGAAGATCCCGACGTTATTTTGCTGGGCGAGCTGCGCGACGTGGAAACCATTCGGCTGGCATTAACGG
CGGCGGAGACCGGACATCTGGTGCTGGCAACGTTACATACGCGAGGTGCGGCGCAGGCCATCGCGCGGCTGGTGGATTCC
TTTGCAGCTACAGAGAAAGATCCGGTGCGTAACCAACTGGCAGACAGCCTGCGGGCGGTTCTTTCGCAAAAACTGGAGGA
GGATAAGCAGGGGGGACGCGTGGCGCTATTCGAGCTGCTCGTCAACACGCCCGCCGTGGGTAATTTGATCCGCGAAGGGA
AAACGCATCAGCTACCCGGCGTGATTCAAACCGGGCAGCAGACAGGTATGCAGACGTTTGCACAAAGTTTGCAGCAGCGA
CAGGCGCAGGGGCGGCTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(60-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.847

100

0.5
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.847

100

0.5
  pilT Neisseria meningitidis 8013

47.866

100

0.482
  pilT Neisseria gonorrhoeae MS11

47.561

100

0.479
  pilT Acinetobacter baylyi ADP1

46.483

100

0.466
  pilT Pseudomonas stutzeri DSM 10701

46.177

100

0.463
  pilT Acinetobacter baumannii strain A118

45.872

100

0.46
  pilT Acinetobacter baumannii D1279779

45.872

100

0.46
  pilT Acinetobacter nosocomialis M2

45.566

100

0.457
  pilT Pseudomonas aeruginosa PAK

45.566

100

0.457
  pilT Legionella pneumophila strain ERS1305867

46.273

98.773

0.457
  pilT Legionella pneumophila strain Lp02

46.273

98.773

0.457
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.64

97.239

0.405
  pilU Pseudomonas stutzeri DSM 10701

38.182

100

0.387
  pilU Vibrio cholerae strain A1552

39.13

98.773

0.386
  pilU Acinetobacter baylyi ADP1

37.152

99.08

0.368