Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   NM897_RS13325 Genome accession   NZ_CP101819
Coordinates   2711584..2712624 (+) Length   346 a.a.
NCBI ID   WP_341960822.1    Uniprot ID   -
Organism   Planococcus maritimus strain KRIBB-KS-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2706584..2717624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM897_RS13300 (NM897_13310) - 2706744..2707289 (-) 546 WP_341960817.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NM897_RS13305 (NM897_13315) - 2707270..2707773 (-) 504 WP_341960818.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NM897_RS13310 (NM897_13320) - 2708165..2708521 (+) 357 WP_341960819.1 hypothetical protein -
  NM897_RS13315 (NM897_13325) - 2708523..2709896 (+) 1374 WP_341960820.1 VanW family protein -
  NM897_RS13320 (NM897_13330) - 2709918..2711579 (+) 1662 WP_341960821.1 ATPase, T2SS/T4P/T4SS family -
  NM897_RS13325 (NM897_13335) pilT 2711584..2712624 (+) 1041 WP_341960822.1 type IV pilus twitching motility protein PilT Machinery gene
  NM897_RS13330 (NM897_13340) - 2712625..2713836 (+) 1212 WP_341960823.1 type II secretion system F family protein -
  NM897_RS13335 (NM897_13345) - 2713966..2714433 (+) 468 WP_341960824.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NM897_RS13340 (NM897_13350) pilM 2714461..2715399 (+) 939 WP_341960825.1 pilus assembly protein PilM -
  NM897_RS13345 (NM897_13355) - 2715402..2716130 (+) 729 WP_341960826.1 fimbrial assembly protein -
  NM897_RS13350 (NM897_13360) - 2716127..2716879 (+) 753 WP_341960827.1 pilus assembly protein PilO -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37949.56 Da        Isoelectric Point: 6.7845

>NTDB_id=712143 NM897_RS13325 WP_341960822.1 2711584..2712624(+) (pilT) [Planococcus maritimus strain KRIBB-KS-1]
MPTTYIDKVLTEAKNLNVSDIHITTGIPPIFRMHGTLKRYGDENLTPDMTKEIAKALMPEILWEQFVEKGEMDFSYSLSG
VARFRVNSFHQRGSISHAFRTIPTEIPSINDLNMPNTLVSLAETQQGLILVTGPTGSGKSTTLAAMIRHINETMPKHIIT
LEDPIEYLHRHGTSIIDQREVGFDTGSFANGLRAALRQDPDVILVGEMRDLETISTAITAAETGHLVMATLHTSSAASTI
ERIIDVFQPGQQAQVRTQLAGILKAVVSQRLLPTANGKGRIAATEILINNAAVANLIRTEKVHQIPNVILTNRSFGMHMM
VSSVQELLAQGKISRQTAQPFLEGGE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=712143 NM897_RS13325 WP_341960822.1 2711584..2712624(+) (pilT) [Planococcus maritimus strain KRIBB-KS-1]
ATGCCCACAACATACATTGATAAAGTGCTAACAGAGGCAAAGAATTTAAATGTGTCGGACATCCATATCACTACAGGCAT
TCCGCCTATATTTCGCATGCACGGGACATTGAAGCGCTATGGCGACGAAAACTTGACCCCTGATATGACCAAGGAAATTG
CAAAAGCGTTAATGCCAGAAATTCTTTGGGAACAATTCGTTGAAAAAGGAGAAATGGATTTTTCCTACTCGCTGTCCGGT
GTCGCGCGTTTCCGGGTCAATTCCTTTCATCAGCGTGGATCAATTTCCCATGCATTCCGGACCATCCCTACTGAAATTCC
GAGTATCAATGATTTGAATATGCCCAACACATTAGTTTCTTTAGCAGAGACGCAACAAGGCTTGATCTTGGTCACTGGAC
CGACCGGGTCGGGCAAGTCGACCACGTTGGCTGCGATGATTCGCCACATCAATGAAACCATGCCTAAACACATCATCACA
TTGGAAGATCCGATCGAATACCTGCATCGTCACGGGACTTCTATTATCGACCAGCGAGAAGTCGGCTTTGATACGGGCTC
ATTCGCGAATGGCTTGCGTGCTGCATTGCGTCAAGATCCGGATGTTATTTTAGTCGGGGAAATGCGTGATTTGGAGACTA
TTTCAACGGCCATCACCGCTGCTGAAACCGGACATCTCGTCATGGCCACGCTGCACACTTCTAGCGCGGCATCAACAATT
GAACGAATTATTGATGTCTTCCAGCCAGGCCAGCAAGCTCAAGTACGAACACAACTGGCAGGCATTCTAAAAGCAGTTGT
TTCTCAACGCTTGTTGCCTACTGCAAACGGCAAAGGACGTATAGCGGCAACCGAGATTCTCATCAATAATGCAGCAGTGG
CAAATCTTATCCGTACTGAGAAAGTCCATCAAATTCCGAACGTAATATTGACCAATCGGTCGTTCGGAATGCATATGATG
GTTTCTTCTGTCCAAGAGCTATTGGCTCAAGGTAAAATCAGCCGGCAAACCGCCCAGCCATTTTTGGAAGGAGGCGAATA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.012

93.353

0.486
  pilT Neisseria meningitidis 8013

50.153

94.509

0.474
  pilT Neisseria gonorrhoeae MS11

49.847

94.509

0.471
  pilT Pseudomonas stutzeri DSM 10701

47.929

97.688

0.468
  pilT Vibrio cholerae strain A1552

48.93

94.509

0.462
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.93

94.509

0.462
  pilT Pseudomonas aeruginosa PAK

46.746

97.688

0.457
  pilT Acinetobacter baylyi ADP1

48.615

93.931

0.457
  pilT Legionella pneumophila strain ERS1305867

48.148

93.642

0.451
  pilT Legionella pneumophila strain Lp02

48.148

93.642

0.451
  pilT Acinetobacter baumannii strain A118

48.287

92.775

0.448
  pilT Acinetobacter baumannii D1279779

48.287

92.775

0.448
  pilT Acinetobacter nosocomialis M2

47.975

92.775

0.445
  pilU Pseudomonas stutzeri DSM 10701

43.75

92.486

0.405
  pilU Vibrio cholerae strain A1552

40.12

96.532

0.387
  pilU Acinetobacter baylyi ADP1

40.498

92.775

0.376