Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | NO430_RS06625 | Genome accession | NZ_CP101719 |
| Coordinates | 1398553..1399590 (+) | Length | 345 a.a. |
| NCBI ID | WP_024743682.1 | Uniprot ID | - |
| Organism | Xanthomonas oryzae pv. oryzae strain CIX2779 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 1397456..1398202 | 1398553..1399590 | flank | 351 |
Gene organization within MGE regions
Location: 1397456..1399590
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NO430_RS06625 (NO430_06625) | pilT | 1398553..1399590 (+) | 1038 | WP_024743682.1 | type IV pilus twitching motility protein PilT | Machinery gene |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38544.16 Da Isoelectric Point: 6.6652
>NTDB_id=711802 NO430_RS06625 WP_024743682.1 1398553..1399590(+) (pilT) [Xanthomonas oryzae pv. oryzae strain CIX2779]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAASEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRIFE
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAASEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRIFE
Nucleotide
Download Length: 1038 bp
>NTDB_id=711802 NO430_RS06625 WP_024743682.1 1398553..1399590(+) (pilT) [Xanthomonas oryzae pv. oryzae strain CIX2779]
ATGGATATCGCTGAACTATTGGCGTTTTCTGTCAAGAACAAGGCGTCGGACCTGCACCTGTCTGCAGGGCTGCCGCCGAT
GATCCGTGTCGATGGCGATGTCCGCCGCATCAATATTCCGGCGCTGGACCATAAGCAGGTGCACGCGCTGGTGTACGACA
TCATGTCGGACAAGCAGCGGCGCGATTACGAAGAATTCCTCGAAGTCGACTTTTCGTTCGAAATTCCGTCGCTGGCGCGT
TTCCGCGTCAATGCGTTCAACCAGAACCGCGGCGCCGGTGCGGTGTTCCGTACCATTCCCTCCGAAGTGCTGACGCTGGA
AGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTGATCGACCAGCCGCAGGGCTTGATCCTGGTGACCGGCCCGACTGGTT
CGGGCAAGTCGACCACGCTGGCCGGCATGATCGACTACATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAC
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAATCAGCGCGAGGTGCACCGCGACACGCACGGCTTCAACGA
GGCGCTGCGCTCGGCGTTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAATTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCCGAATCGCTGCGCGCAGTGATTTCGCAGGC
GCTGCTGAAGAAAGTCGGCGGCGGGCGTACAGCAGCATCGGAAATCATGGTCGGCACCCCGGCCATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCCTCCATCCAGACCGGCCAGCAATACGGCATGCAGACGCTCGATCAGCACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACGCGCAACCAGGCGCGCGAGTACGCCAAGGACAAGCGGATATTCGAATAG
ATGGATATCGCTGAACTATTGGCGTTTTCTGTCAAGAACAAGGCGTCGGACCTGCACCTGTCTGCAGGGCTGCCGCCGAT
GATCCGTGTCGATGGCGATGTCCGCCGCATCAATATTCCGGCGCTGGACCATAAGCAGGTGCACGCGCTGGTGTACGACA
TCATGTCGGACAAGCAGCGGCGCGATTACGAAGAATTCCTCGAAGTCGACTTTTCGTTCGAAATTCCGTCGCTGGCGCGT
TTCCGCGTCAATGCGTTCAACCAGAACCGCGGCGCCGGTGCGGTGTTCCGTACCATTCCCTCCGAAGTGCTGACGCTGGA
AGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTGATCGACCAGCCGCAGGGCTTGATCCTGGTGACCGGCCCGACTGGTT
CGGGCAAGTCGACCACGCTGGCCGGCATGATCGACTACATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAC
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAATCAGCGCGAGGTGCACCGCGACACGCACGGCTTCAACGA
GGCGCTGCGCTCGGCGTTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAATTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCCGAATCGCTGCGCGCAGTGATTTCGCAGGC
GCTGCTGAAGAAAGTCGGCGGCGGGCGTACAGCAGCATCGGAAATCATGGTCGGCACCCCGGCCATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCCTCCATCCAGACCGGCCAGCAATACGGCATGCAGACGCTCGATCAGCACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACGCGCAACCAGGCGCGCGAGTACGCCAAGGACAAGCGGATATTCGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter nosocomialis M2 |
79.942 |
99.71 |
0.797 |
| pilT | Acinetobacter baumannii D1279779 |
79.942 |
99.71 |
0.797 |
| pilT | Acinetobacter baumannii strain A118 |
79.942 |
99.71 |
0.797 |
| pilT | Pseudomonas stutzeri DSM 10701 |
79.36 |
99.71 |
0.791 |
| pilT | Acinetobacter baylyi ADP1 |
78.779 |
99.71 |
0.786 |
| pilT | Pseudomonas aeruginosa PAK |
79.056 |
98.261 |
0.777 |
| pilT | Legionella pneumophila strain Lp02 |
75.291 |
99.71 |
0.751 |
| pilT | Legionella pneumophila strain ERS1305867 |
75.291 |
99.71 |
0.751 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
71.125 |
95.362 |
0.678 |
| pilT | Vibrio cholerae strain A1552 |
71.125 |
95.362 |
0.678 |
| pilT | Neisseria meningitidis 8013 |
65.982 |
98.841 |
0.652 |
| pilT | Neisseria gonorrhoeae MS11 |
65.689 |
98.841 |
0.649 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.855 |
100 |
0.499 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.708 |
98.261 |
0.4 |
| pilU | Acinetobacter baylyi ADP1 |
40.294 |
98.551 |
0.397 |
| pilU | Vibrio cholerae strain A1552 |
40.597 |
97.101 |
0.394 |