Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PGH47_RS13640 Genome accession   NZ_CP116353
Coordinates   3095059..3096987 (+) Length   642 a.a.
NCBI ID   WP_271663656.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS 31     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3090059..3101987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGH47_RS13625 (PGH47_13625) - 3091213..3091521 (+) 309 WP_125525786.1 YtxH domain-containing protein -
  PGH47_RS13630 (PGH47_13630) - 3091673..3093127 (+) 1455 WP_271663654.1 FGGY family carbohydrate kinase -
  PGH47_RS13635 (PGH47_13635) rcrP 3093326..3095059 (+) 1734 WP_271663655.1 ABC transporter ATP-binding protein Regulator
  PGH47_RS13640 (PGH47_13640) rcrQ 3095059..3096987 (+) 1929 WP_271663656.1 ABC transporter ATP-binding protein Regulator
  PGH47_RS13645 (PGH47_13645) - 3097091..3098395 (-) 1305 WP_271663657.1 RNA polymerase sigma factor -
  PGH47_RS13650 (PGH47_13650) dnaG 3098508..3100409 (-) 1902 WP_107906703.1 DNA primase -
  PGH47_RS13655 (PGH47_13655) - 3100519..3101784 (-) 1266 WP_271663658.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69937.41 Da        Isoelectric Point: 5.9565

>NTDB_id=709520 PGH47_RS13640 WP_271663656.1 3095059..3096987(+) (rcrQ) [Streptomyces sp. HUAS 31]
MAGPMGRMMAGGGPDQRSLDFKVSGRRLIARFKPERITIYVLLFCVVVSVGLSVAGPKILGEATDLVFAGIVGRQFKSGM
TKEQVLAAMRERGDDQIADMLRSTDFTPGQGIDFGAVGNVLLFALAVFTVAGLLMAVATRLVNRAVNRTMYRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWLLALVALVTVPLSFFVATRVGK
RSQPHFVQQWRTTGKLNAHVEEMYTGHTLVKVFGRQEESARQFAEQNDALYEAGFKAQFNSGVMQPLMLFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQQADPVPGVRPEELRGRVALE
GVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSSGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGSIVEQGAHGELLAADGSYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=709520 PGH47_RS13640 WP_271663656.1 3095059..3096987(+) (rcrQ) [Streptomyces sp. HUAS 31]
ATGGCCGGGCCCATGGGACGGATGATGGCCGGCGGCGGGCCCGATCAGCGGTCGCTGGACTTCAAGGTGTCGGGCCGGCG
GCTGATCGCGCGGTTCAAGCCCGAGCGGATCACCATCTACGTGCTGCTGTTCTGCGTGGTGGTGAGCGTGGGCCTGTCGG
TCGCGGGGCCGAAGATCCTCGGTGAGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGCCAGTTCAAGTCCGGGATG
ACCAAGGAACAGGTCCTCGCGGCCATGCGGGAGCGCGGCGACGACCAGATCGCCGACATGCTGCGCAGCACCGACTTCAC
GCCCGGCCAGGGCATCGACTTCGGGGCCGTGGGGAACGTCCTGCTGTTCGCGCTGGCCGTGTTCACGGTCGCCGGTCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTGAACCGCACGATGTACCGGATGCGGGAGGACGTCCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGTCAGCGCGGTGAGGTGCTGTCGCGGGCGACCAACGACATCGACAA
CATCGGGCAGACTCTCCAGCAGTCGATGGGGCAGCTGATCAACTCGGTGCTGACCATCATCGGTGTGCTGGCGATGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGTTGTCGTTCTTCGTCGCCACGCGCGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGTACGACCGGCAAGCTCAACGCGCACGTGGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCCAGGCAGTTCGCCGAGCAGAACGACGCACTGTACGAGGCCG
GGTTCAAGGCACAGTTCAACAGCGGTGTCATGCAGCCGCTGATGCTGTTCGTGTCGAACCTGAACTACGTCCTGGTCGCC
GTGGTCGGCGGACTGCGGGTCGCCTCGGGTTCGCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTGGCGTCGATGGCGAACCTCGTGCAGTCCGGTGTCGCCTCGGCCGAGCGGGTCTTCGAGC
TCCTCGACGCGGAGGAGCAGCAGGCGGATCCGGTGCCGGGCGTGCGGCCGGAGGAGCTGCGGGGCCGGGTGGCGCTGGAG
GGCGTGTCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGAAGGTGGAACCCGGGCACACGGTCGC
GATCGTGGGGCCGACGGGTGCCGGCAAGACGACCCTGGTCAACCTGCTGATGCGCTTCTACGACGTGTCGTCCGGGCGCA
TCACCCTCGACGGCGTGGACATCGCCCGGATGTCGCGGGACGAGCTGCGCGCCGGGATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCCGAGAACATCGCCTACGGGGCGTCCAGGGAGGTCACTCGCGGCGAGATCGAGGAGGC
CGCGCGGGCCGCCCACGCCGACCGGTTCATCCGTACGCTGCCCGACGGGTACGACACGGTGATCGACGACGAGGGGTCGG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGTCCTCGGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGTACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATTCGGGACGCGGACACGATCCTGGTGATGGAGGACGGTTCGATCGTGGAACAGG
GTGCGCACGGGGAGCTGTTGGCGGCCGACGGCTCGTATGCGCGGTTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCGGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.919

92.523

0.388