Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   NMD03_RS04560 Genome accession   NZ_CP101044
Coordinates   922286..923266 (+) Length   326 a.a.
NCBI ID   WP_047357838.1    Uniprot ID   -
Organism   Citrobacter braakii strain OT113     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 917286..928266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD03_RS04530 (NMD03_04540) - 917662..918648 (-) 987 WP_169329839.1 TRAP transporter substrate-binding protein -
  NMD03_RS04535 (NMD03_04545) hemW 918962..920098 (-) 1137 WP_200079816.1 radical SAM family heme chaperone HemW -
  NMD03_RS04540 (NMD03_04550) - 920091..920684 (-) 594 WP_016154402.1 XTP/dITP diphosphatase -
  NMD03_RS04545 (NMD03_04555) yggU 920692..920982 (-) 291 WP_005123286.1 DUF167 family protein YggU -
  NMD03_RS04550 (NMD03_04560) - 920979..921545 (-) 567 WP_016154401.1 YggT family protein -
  NMD03_RS04555 (NMD03_04565) - 921564..922268 (-) 705 WP_016154400.1 YggS family pyridoxal phosphate-dependent enzyme -
  NMD03_RS04560 (NMD03_04570) pilT 922286..923266 (+) 981 WP_047357838.1 type IV pilus twitching motility protein PilT Machinery gene
  NMD03_RS04565 (NMD03_04575) ruvX 923263..923679 (-) 417 WP_003825428.1 Holliday junction resolvase RuvX -
  NMD03_RS04570 (NMD03_04580) - 923679..924242 (-) 564 WP_016154395.1 YqgE/AlgH family protein -
  NMD03_RS04575 (NMD03_04585) gshB 924419..925366 (-) 948 WP_016154394.1 glutathione synthase -
  NMD03_RS04580 (NMD03_04590) rsmE 925379..926110 (-) 732 WP_016154393.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  NMD03_RS04585 (NMD03_04595) endA 926186..926893 (-) 708 WP_019077649.1 deoxyribonuclease I -
  NMD03_RS04590 (NMD03_04600) - 926988..927485 (-) 498 WP_016157438.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35910.98 Da        Isoelectric Point: 6.1727

>NTDB_id=708345 NMD03_RS04560 WP_047357838.1 922286..923266(+) (pilT) [Citrobacter braakii strain OT113]
MNMEEIVALSVKHNVSDLHLCNAWPARWRIGGKVEIAPFTPPDVENLLMCWLSEQQQVQWREQGQIDFALTLADSRRLRA
SAFAHQQGTSLALRLLPLECPRLDDLQTPEAIPELLHGENGLVLVTGATGSGKSTTLAAMVEYLNQHIAGHILTLEDPIE
YRYTSQRCLIQQREVGVHCASFAAGLRGALREDPDVILLGELRDVETIRLALTAAETGHLVLATLHTRGAAQAIARLVDT
FPAQEKDPVRNQLADSLRAVLSQKLEEDKQGGRVALFELLVNTPAVGNLIREGKTHQLPGVIQTGQQTGMQTFAQSQQQR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=708345 NMD03_RS04560 WP_047357838.1 922286..923266(+) (pilT) [Citrobacter braakii strain OT113]
ATGAATATGGAAGAAATAGTGGCCCTTAGTGTAAAGCATAACGTGTCGGATCTACACCTGTGCAATGCATGGCCTGCGCG
CTGGCGCATAGGTGGAAAAGTCGAAATAGCACCATTTACTCCCCCTGACGTGGAGAATCTGCTGATGTGCTGGCTCAGTG
AGCAACAACAGGTACAGTGGCGGGAACAGGGGCAGATTGATTTTGCCCTTACGCTGGCGGACTCCCGGCGTCTACGCGCC
AGCGCATTTGCTCATCAACAGGGAACCTCGCTGGCGCTAAGATTGCTACCGCTTGAATGTCCTCGTTTAGACGATCTTCA
GACCCCGGAGGCCATACCTGAACTGCTGCACGGTGAAAATGGATTAGTTCTGGTCACTGGAGCCACCGGCAGCGGTAAAT
CAACCACCCTGGCGGCGATGGTGGAGTACCTTAATCAACATATTGCGGGGCATATTCTAACGCTGGAAGATCCGATTGAA
TATCGCTACACCAGCCAGCGTTGTCTTATTCAACAGCGGGAGGTGGGCGTACACTGCGCTTCTTTTGCTGCCGGTTTGCG
CGGCGCGTTACGCGAAGATCCCGACGTCATTTTGCTGGGCGAGCTGCGCGACGTGGAAACTATTCGTTTGGCCTTAACGG
CAGCGGAGACCGGGCATCTGGTGTTGGCAACCTTACATACGCGAGGGGCGGCGCAGGCCATCGCGCGGCTGGTGGACACC
TTTCCCGCACAGGAGAAAGATCCGGTGCGTAACCAGCTGGCAGACAGCCTGCGGGCGGTACTTTCGCAAAAGTTGGAGGA
AGATAAGCAGGGAGGACGCGTGGCGCTATTCGAACTGCTCGTCAACACTCCCGCCGTGGGCAATTTGATCCGCGAAGGGA
AAACGCATCAGCTACCCGGTGTGATTCAAACCGGGCAGCAGACAGGTATGCAGACGTTTGCACAAAGTCAGCAGCAGCGC
CAGGCGCAGGGGCGACTTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(59-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.765

100

0.509
  pilT Vibrio cholerae strain A1552

50.765

100

0.509
  pilT Neisseria meningitidis 8013

46.341

100

0.466
  pilT Neisseria gonorrhoeae MS11

46.037

100

0.463
  pilT Legionella pneumophila strain ERS1305867

47.484

97.546

0.463
  pilT Legionella pneumophila strain Lp02

47.484

97.546

0.463
  pilT Acinetobacter baylyi ADP1

46.177

100

0.463
  pilT Acinetobacter baumannii strain A118

45.872

100

0.46
  pilT Pseudomonas stutzeri DSM 10701

45.872

100

0.46
  pilT Acinetobacter baumannii D1279779

45.872

100

0.46
  pilT Pseudomonas aeruginosa PAK

45.566

100

0.457
  pilT Acinetobacter nosocomialis M2

45.566

100

0.457
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.271

97.239

0.411
  pilU Pseudomonas stutzeri DSM 10701

38.788

100

0.393
  pilU Vibrio cholerae strain A1552

39.13

98.773

0.386
  pilU Acinetobacter baylyi ADP1

36.728

99.387

0.365