Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PIC05_RS03970 Genome accession   NZ_CP116106
Coordinates   819045..820025 (+) Length   326 a.a.
NCBI ID   WP_001389259.1    Uniprot ID   -
Organism   Escherichia coli strain DETEC-P829     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 814045..825025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC05_RS03940 (PIC05_03940) yggM 814560..815567 (+) 1008 WP_000745210.1 DUF1202 family protein -
  PIC05_RS03945 (PIC05_03945) hemW 815722..816858 (-) 1137 WP_000239928.1 radical SAM family heme chaperone HemW -
  PIC05_RS03950 (PIC05_03950) rdgB 816851..817444 (-) 594 WP_001174735.1 XTP/dITP diphosphatase -
  PIC05_RS03955 (PIC05_03955) yggU 817452..817742 (-) 291 WP_001277222.1 DUF167 family protein YggU -
  PIC05_RS03960 (PIC05_03960) yggT 817739..818305 (-) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  PIC05_RS03965 (PIC05_03965) yggS 818323..819027 (-) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  PIC05_RS03970 (PIC05_03970) pilT 819045..820025 (+) 981 WP_001389259.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  PIC05_RS03975 (PIC05_03975) - 820252..821232 (+) 981 WP_000399648.1 IS110-like element IS621 family transposase -
  PIC05_RS03980 (PIC05_03980) ruvX 821479..821895 (-) 417 WP_000017111.1 Holliday junction resolvase RuvX -
  PIC05_RS03985 (PIC05_03985) yqgE 821895..822458 (-) 564 WP_001053178.1 YqgE/AlgH family protein -
  PIC05_RS03990 (PIC05_03990) gshB 822567..823517 (-) 951 WP_000593273.1 glutathione synthase -
  PIC05_RS03995 (PIC05_03995) rsmE 823530..824261 (-) 732 WP_001300912.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35984.20 Da        Isoelectric Point: 5.7980

>NTDB_id=707908 PIC05_RS03970 WP_001389259.1 819045..820025(+) (pilT) [Escherichia coli strain DETEC-P829]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYTSQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAVQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSFQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=707908 PIC05_RS03970 WP_001389259.1 819045..820025(+) (pilT) [Escherichia coli strain DETEC-P829]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGCATTCGCGGCAGAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAAAATGGTCAGCTGGATTTTGCCGTGTCGCTGGCGGAAAACCAGCGATTGCGCGGC
AGTGCATTCGCGCAACGGCAAGGCATTTCGCTGGCGTTACGGCTGTTGCCTTCGCACTGCCCGCAGCTCGAACAGCTTGG
CGCACCACCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGAAGTGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATACCAGTCAGCGATGTTTGATCCAGCAGCGGGAAATCGGTTTGCATTGTATGACGTTCGCATCGGGATTGCG
GGCCGCATTGCGCGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGACACCTGGTACTGGCAACCTTACATACACGTGGTGCCGTGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCAGCGCAGGAAAAAGATCCCGTACGTAATCAACTGGCAGGTAGTTTACGGGCCGTGTTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTATTGATTAACACTCCCGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGATAACGTTTCAGCAGAGTTTTCAGCAGCGA
GTGGGGGAAGGGCGTTTGTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.235

100

0.494
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.235

100

0.494
  pilT Neisseria meningitidis 8013

48.476

100

0.488
  pilT Neisseria gonorrhoeae MS11

48.171

100

0.485
  pilT Acinetobacter baylyi ADP1

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.177

100

0.463
  pilT Acinetobacter baumannii D1279779

46.177

100

0.463
  pilT Acinetobacter nosocomialis M2

46.177

100

0.463
  pilT Pseudomonas stutzeri DSM 10701

46.177

100

0.463
  pilT Pseudomonas aeruginosa PAK

45.872

100

0.46
  pilT Legionella pneumophila strain ERS1305867

45.26

100

0.454
  pilT Legionella pneumophila strain Lp02

45.26

100

0.454
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.514

100

0.399
  pilU Pseudomonas stutzeri DSM 10701

37.576

100

0.38
  pilU Acinetobacter baylyi ADP1

36.957

98.773

0.365