Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | EP379_RS00110 | Genome accession | NZ_AP018724 |
| Coordinates | 24849..26006 (-) | Length | 385 a.a. |
| NCBI ID | WP_127474529.1 | Uniprot ID | - |
| Organism | Sulfurivermis fontis strain JG42 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 19849..31006
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EP379_RS16885 | - | 20246..20578 (-) | 333 | Protein_17 | transposase | - |
| EP379_RS16890 | - | 20706..20852 (-) | 147 | Protein_18 | transposase | - |
| EP379_RS00095 | - | 21296..22294 (+) | 999 | WP_172600321.1 | hypothetical protein | - |
| EP379_RS00100 | - | 22308..24431 (+) | 2124 | WP_127474525.1 | putative bifunctional diguanylate cyclase/phosphodiesterase | - |
| EP379_RS00110 | pilU | 24849..26006 (-) | 1158 | WP_127474529.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| EP379_RS00115 | pilT | 26027..27064 (-) | 1038 | WP_127474531.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| EP379_RS00120 | - | 27156..27860 (+) | 705 | WP_127474533.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| EP379_RS00125 | proC | 27905..28735 (+) | 831 | WP_127474535.1 | pyrroline-5-carboxylate reductase | - |
| EP379_RS00130 | - | 28732..29313 (+) | 582 | WP_127474536.1 | YggT family protein | - |
| EP379_RS00135 | - | 29310..29603 (+) | 294 | WP_127474538.1 | DUF167 family protein | - |
Sequence
Protein
Download Length: 385 a.a. Molecular weight: 42944.29 Da Isoelectric Point: 6.0955
>NTDB_id=70502 EP379_RS00110 WP_127474529.1 24849..26006(-) (pilU) [Sulfurivermis fontis strain JG42]
MDFDQLLKLMVHKNGSDLFITAGIPPSMKVNGQIAPVAKASLTPDQAKQIVYSIMNDEQRETFERTHECNFALSRSGIGR
FRVNVFQQRNQVGMVLRKIETKIPTFEDLNLPPILAEIAMTKRGIVLFVGGTGSGKSTSLAAMVDYRNKNSHGHIITIED
PIEYVHQHAGCIVTQREVGIDTDSFEDALVNTLRQAPDVILIGEIRHRETMEHAIAFAETGHLCLATLHANNANQAMDRI
INFFPEDRRSQLLMDLSLNLKAVVAQRLIPRADGQGRRVAVEIMLNTPLIADLILKGEVHNLKEQMKKGGQVGMRTFDQA
LYELYREGHITMEDALRNADSANEVRLMIKLGDIETPEELTSGLEGLSLEVSEDEKIPGGPKLRY
MDFDQLLKLMVHKNGSDLFITAGIPPSMKVNGQIAPVAKASLTPDQAKQIVYSIMNDEQRETFERTHECNFALSRSGIGR
FRVNVFQQRNQVGMVLRKIETKIPTFEDLNLPPILAEIAMTKRGIVLFVGGTGSGKSTSLAAMVDYRNKNSHGHIITIED
PIEYVHQHAGCIVTQREVGIDTDSFEDALVNTLRQAPDVILIGEIRHRETMEHAIAFAETGHLCLATLHANNANQAMDRI
INFFPEDRRSQLLMDLSLNLKAVVAQRLIPRADGQGRRVAVEIMLNTPLIADLILKGEVHNLKEQMKKGGQVGMRTFDQA
LYELYREGHITMEDALRNADSANEVRLMIKLGDIETPEELTSGLEGLSLEVSEDEKIPGGPKLRY
Nucleotide
Download Length: 1158 bp
>NTDB_id=70502 EP379_RS00110 WP_127474529.1 24849..26006(-) (pilU) [Sulfurivermis fontis strain JG42]
ATGGACTTCGATCAGCTGCTCAAACTGATGGTGCACAAGAACGGCTCCGACCTGTTCATCACCGCCGGCATCCCACCCAG
CATGAAGGTCAACGGCCAGATCGCACCGGTGGCCAAGGCCAGCCTGACGCCGGATCAGGCCAAGCAGATCGTGTACTCCA
TCATGAACGATGAGCAGCGCGAGACCTTCGAGCGCACACACGAATGCAATTTCGCACTGTCCCGCTCCGGCATCGGCCGC
TTCCGCGTCAACGTGTTTCAGCAGCGCAACCAGGTAGGCATGGTGCTGCGAAAGATCGAGACCAAGATCCCTACCTTTGA
AGATCTCAACCTACCGCCGATACTGGCCGAGATCGCCATGACCAAACGTGGTATCGTGCTGTTCGTCGGCGGTACCGGTT
CCGGTAAGTCCACCTCGCTGGCGGCAATGGTCGACTACCGCAACAAGAACAGCCACGGTCACATCATCACCATTGAAGAT
CCCATCGAATACGTCCATCAGCACGCCGGCTGCATCGTCACTCAGCGCGAGGTAGGCATCGATACCGACAGCTTCGAGGA
TGCCCTGGTCAATACCCTGCGTCAGGCGCCGGACGTCATCCTGATCGGCGAAATTCGTCACCGCGAGACCATGGAACATG
CCATTGCCTTCGCCGAAACTGGCCACCTCTGTTTGGCTACCCTGCATGCCAACAACGCCAATCAGGCAATGGATCGCATC
ATCAACTTCTTCCCTGAAGATCGCCGCTCTCAGCTGCTGATGGACCTGTCCCTCAACCTGAAGGCGGTAGTCGCGCAGCG
CCTCATCCCGCGCGCCGATGGCCAGGGCCGCCGCGTGGCGGTGGAGATCATGCTCAATACGCCGCTGATCGCCGACCTGA
TCCTGAAGGGCGAGGTGCACAACCTGAAGGAACAGATGAAGAAGGGAGGTCAAGTCGGCATGCGCACCTTCGATCAGGCC
CTGTACGAGCTGTACCGGGAGGGCCATATCACCATGGAGGATGCGCTGCGCAATGCCGACTCGGCCAACGAGGTGCGCCT
GATGATCAAACTGGGCGATATCGAAACCCCCGAAGAACTCACCTCCGGGCTGGAAGGGCTGTCACTGGAGGTATCGGAAG
ACGAGAAAATCCCCGGCGGACCGAAACTTCGTTACTAG
ATGGACTTCGATCAGCTGCTCAAACTGATGGTGCACAAGAACGGCTCCGACCTGTTCATCACCGCCGGCATCCCACCCAG
CATGAAGGTCAACGGCCAGATCGCACCGGTGGCCAAGGCCAGCCTGACGCCGGATCAGGCCAAGCAGATCGTGTACTCCA
TCATGAACGATGAGCAGCGCGAGACCTTCGAGCGCACACACGAATGCAATTTCGCACTGTCCCGCTCCGGCATCGGCCGC
TTCCGCGTCAACGTGTTTCAGCAGCGCAACCAGGTAGGCATGGTGCTGCGAAAGATCGAGACCAAGATCCCTACCTTTGA
AGATCTCAACCTACCGCCGATACTGGCCGAGATCGCCATGACCAAACGTGGTATCGTGCTGTTCGTCGGCGGTACCGGTT
CCGGTAAGTCCACCTCGCTGGCGGCAATGGTCGACTACCGCAACAAGAACAGCCACGGTCACATCATCACCATTGAAGAT
CCCATCGAATACGTCCATCAGCACGCCGGCTGCATCGTCACTCAGCGCGAGGTAGGCATCGATACCGACAGCTTCGAGGA
TGCCCTGGTCAATACCCTGCGTCAGGCGCCGGACGTCATCCTGATCGGCGAAATTCGTCACCGCGAGACCATGGAACATG
CCATTGCCTTCGCCGAAACTGGCCACCTCTGTTTGGCTACCCTGCATGCCAACAACGCCAATCAGGCAATGGATCGCATC
ATCAACTTCTTCCCTGAAGATCGCCGCTCTCAGCTGCTGATGGACCTGTCCCTCAACCTGAAGGCGGTAGTCGCGCAGCG
CCTCATCCCGCGCGCCGATGGCCAGGGCCGCCGCGTGGCGGTGGAGATCATGCTCAATACGCCGCTGATCGCCGACCTGA
TCCTGAAGGGCGAGGTGCACAACCTGAAGGAACAGATGAAGAAGGGAGGTCAAGTCGGCATGCGCACCTTCGATCAGGCC
CTGTACGAGCTGTACCGGGAGGGCCATATCACCATGGAGGATGCGCTGCGCAATGCCGACTCGGCCAACGAGGTGCGCCT
GATGATCAAACTGGGCGATATCGAAACCCCCGAAGAACTCACCTCCGGGCTGGAAGGGCTGTCACTGGAGGTATCGGAAG
ACGAGAAAATCCCCGGCGGACCGAAACTTCGTTACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
68.602 |
98.442 |
0.675 |
| pilU | Acinetobacter baylyi ADP1 |
63.277 |
91.948 |
0.582 |
| pilU | Vibrio cholerae strain A1552 |
55.143 |
90.909 |
0.501 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
44.248 |
88.052 |
0.39 |
| pilT | Legionella pneumophila strain Lp02 |
44.179 |
87.013 |
0.384 |
| pilT | Legionella pneumophila strain ERS1305867 |
44.179 |
87.013 |
0.384 |
| pilT | Acinetobacter baumannii strain A118 |
42.985 |
87.013 |
0.374 |
| pilT | Acinetobacter nosocomialis M2 |
42.985 |
87.013 |
0.374 |
| pilT | Acinetobacter baumannii D1279779 |
42.985 |
87.013 |
0.374 |
| pilT | Vibrio cholerae strain A1552 |
43.598 |
85.195 |
0.371 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
43.598 |
85.195 |
0.371 |
| pilT | Acinetobacter baylyi ADP1 |
41.935 |
88.571 |
0.371 |
| pilT | Pseudomonas aeruginosa PAK |
41.888 |
88.052 |
0.369 |
| pilT | Pseudomonas stutzeri DSM 10701 |
41.888 |
88.052 |
0.369 |