Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PCP56_RS20015 Genome accession   NZ_CP115481
Coordinates   4255008..4255364 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain F002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4250008..4260364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP56_RS19990 (PCP56_20000) fabF 4250220..4251464 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  PCP56_RS19995 (PCP56_20005) pabC 4251464..4252279 (+) 816 WP_003452483.1 aminodeoxychorismate lyase -
  PCP56_RS20000 (PCP56_20010) mltG 4252285..4253334 (+) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  PCP56_RS20005 (PCP56_20015) tmk 4253363..4253995 (+) 633 WP_003091125.1 dTMP kinase -
  PCP56_RS20010 (PCP56_20020) - 4253988..4254974 (+) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  PCP56_RS20015 (PCP56_20025) pilZ 4255008..4255364 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  PCP56_RS20020 (PCP56_20030) - 4255379..4256155 (+) 777 WP_003091117.1 TatD family hydrolase -
  PCP56_RS20025 (PCP56_20035) - 4256381..4257514 (-) 1134 WP_031684456.1 aminotransferase class V-fold PLP-dependent enzyme -
  PCP56_RS20030 (PCP56_20040) - 4257600..4258238 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  PCP56_RS20035 (PCP56_20045) - 4258388..4259284 (+) 897 WP_023116994.1 radical SAM protein -
  PCP56_RS20040 (PCP56_20050) - 4259349..4259981 (+) 633 WP_023116993.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=704922 PCP56_RS20015 WP_003091119.1 4255008..4255364(+) (pilZ) [Pseudomonas aeruginosa strain F002]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=704922 PCP56_RS20015 WP_003091119.1 4255008..4255364(+) (pilZ) [Pseudomonas aeruginosa strain F002]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449