Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PCP76_RS15180 Genome accession   NZ_CP115297
Coordinates   3222244..3222600 (-) Length   118 a.a.
NCBI ID   WP_073649184.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 135     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3217244..3227600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP76_RS15155 (PCP76_15140) - 3217647..3218279 (-) 633 WP_039027682.1 DUF4823 domain-containing protein -
  PCP76_RS15160 (PCP76_15145) - 3218344..3219240 (-) 897 WP_003091113.1 radical SAM protein -
  PCP76_RS15165 (PCP76_15150) - 3219370..3220008 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  PCP76_RS15170 (PCP76_15155) - 3220094..3221227 (+) 1134 WP_328992708.1 aminotransferase class V-fold PLP-dependent enzyme -
  PCP76_RS15175 (PCP76_15160) - 3221453..3222229 (-) 777 WP_033970427.1 TatD family hydrolase -
  PCP76_RS15180 (PCP76_15165) pilZ 3222244..3222600 (-) 357 WP_073649184.1 PilZ domain-containing protein Machinery gene
  PCP76_RS15185 (PCP76_15170) - 3222634..3223620 (-) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  PCP76_RS15190 (PCP76_15175) tmk 3223613..3224245 (-) 633 WP_003122486.1 dTMP kinase -
  PCP76_RS15195 (PCP76_15180) mltG 3224274..3225323 (-) 1050 WP_057389467.1 endolytic transglycosylase MltG -
  PCP76_RS15200 (PCP76_15185) pabC 3225329..3226144 (-) 816 WP_033970430.1 aminodeoxychorismate lyase -
  PCP76_RS15205 (PCP76_15190) fabF 3226144..3227388 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12873.96 Da        Isoelectric Point: 9.9969

>NTDB_id=702812 PCP76_RS15180 WP_073649184.1 3222244..3222600(-) (pilZ) [Pseudomonas aeruginosa strain 135]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNAARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=702812 PCP76_RS15180 WP_073649184.1 3222244..3222600(-) (pilZ) [Pseudomonas aeruginosa strain 135]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACGCCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449