Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP43_RS06470 Genome accession   NZ_CP115267
Coordinates   1373171..1373695 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain F021     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1368171..1378695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP43_RS06450 (PCP43_06450) - 1368238..1370709 (-) 2472 WP_016562439.1 penicillin-binding protein 1A -
  PCP43_RS06455 (PCP43_06455) pilM 1370894..1371958 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP43_RS06460 (PCP43_06460) pilN 1371958..1372554 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP43_RS06465 (PCP43_06465) pilO 1372551..1373174 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP43_RS06470 (PCP43_06470) comL/pilP 1373171..1373695 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP43_RS06475 (PCP43_06475) pilQ 1373749..1375893 (+) 2145 WP_023087871.1 type 4a pilus secretin PilQ Machinery gene
  PCP43_RS06480 (PCP43_06480) aroK 1375905..1376423 (+) 519 WP_003095833.1 shikimate kinase AroK -
  PCP43_RS06485 (PCP43_06485) aroB 1376473..1377579 (+) 1107 WP_003107839.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=700438 PCP43_RS06470 WP_003095836.1 1373171..1373695(+) (comL/pilP) [Pseudomonas aeruginosa strain F021]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=700438 PCP43_RS06470 WP_003095836.1 1373171..1373695(+) (comL/pilP) [Pseudomonas aeruginosa strain F021]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362