Detailed information NTG0699331

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP59_RS11360
• Genome accession: NZ_CP115254
• Coordinates: 2464134..2465138 (+)
• Length: 334 a.a.
• NCBI ID: WP_003143264.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F032
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2459134..2470138

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP59_RS11330 (PCP59_11340)	fghA	2459226..2460077 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PCP59_RS11335 (PCP59_11345)	ispF	2460148..2460621 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP59_RS11340 (PCP59_11350)	truD	2460618..2461685 (+)	1068	WP_034001159.1	tRNA pseudouridine(13) synthase TruD	-
PCP59_RS11345 (PCP59_11355)	surE	2461673..2462422 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP59_RS11350 (PCP59_11360)	-	2462455..2463090 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP59_RS11355 (PCP59_11365)	-	2463136..2464029 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP59_RS11360 (PCP59_11370)	rpoS	2464134..2465138 (+)	1005	WP_003143264.1	RNA polymerase sigma factor RpoS	Regulator
PCP59_RS11365 (PCP59_11375)	fdxA	2465565..2465888 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP59_RS11370 (PCP59_11380)	mutS	2465955..2468522 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP59_RS11375 (PCP59_11385)	-	2468648..2469655 (-)	1008	WP_113886799.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38254.43 Da
• Isoelectric Point: 5.0507

>NTDB_id=699331 PCP59_RS11360 WP_003143264.1 2464134..2465138(+) (rpoS) [Pseudomonas aeruginosa strain F032]
MALKKEGPEFDRDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=699331 PCP59_RS11360 WP_003143264.1 2464134..2465138(+) (rpoS) [Pseudomonas aeruginosa strain F032]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCGCGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.381	83.234	0.611