Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   NFJ78_RS03960 Genome accession   NZ_CP099384
Coordinates   810286..811266 (+) Length   326 a.a.
NCBI ID   WP_279262782.1    Uniprot ID   -
Organism   Citrobacter braakii strain RHB13-SO-C07     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 805286..816266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ78_RS03920 (NFJ78_03915) hemW 805708..806844 (-) 1137 WP_222186317.1 radical SAM family heme chaperone HemW -
  NFJ78_RS03925 (NFJ78_03920) - 806837..807430 (-) 594 WP_016154402.1 XTP/dITP diphosphatase -
  NFJ78_RS03930 (NFJ78_03925) yggU 807438..807728 (-) 291 WP_222186318.1 DUF167 family protein YggU -
  NFJ78_RS03935 (NFJ78_03930) - 807725..808291 (-) 567 WP_016154401.1 YggT family protein -
  NFJ78_RS03940 (NFJ78_03935) - 808310..809014 (-) 705 WP_101700213.1 YggS family pyridoxal phosphate-dependent enzyme -
  NFJ78_RS03945 (NFJ78_03940) - 808987..809157 (+) 171 Protein_776 type IV pili twitching motility protein PilT -
  NFJ78_RS03950 (NFJ78_03945) - 809673..810092 (+) 420 WP_016154398.1 DUF3828 domain-containing protein -
  NFJ78_RS03955 (NFJ78_03950) - 810098..810268 (-) 171 Protein_778 YggS family pyridoxal phosphate enzyme -
  NFJ78_RS03960 (NFJ78_03955) pilT 810286..811266 (+) 981 WP_279262782.1 type IV pilus twitching motility protein PilT Machinery gene
  NFJ78_RS03965 (NFJ78_03960) ruvX 811263..811679 (-) 417 WP_003825428.1 Holliday junction resolvase RuvX -
  NFJ78_RS03970 (NFJ78_03965) - 811679..812242 (-) 564 WP_016154395.1 YqgE/AlgH family protein -
  NFJ78_RS03975 (NFJ78_03970) gshB 812419..813366 (-) 948 WP_016154394.1 glutathione synthase -
  NFJ78_RS03980 (NFJ78_03975) rsmE 813379..814110 (-) 732 WP_016154393.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  NFJ78_RS03985 (NFJ78_03980) endA 814186..814893 (-) 708 WP_019077649.1 deoxyribonuclease I -
  NFJ78_RS03990 (NFJ78_03985) - 814988..815485 (-) 498 WP_016157438.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35955.04 Da        Isoelectric Point: 6.1727

>NTDB_id=699264 NFJ78_RS03960 WP_279262782.1 810286..811266(+) (pilT) [Citrobacter braakii strain RHB13-SO-C07]
MNMEEIVALSVKHNVSDLHLCNAWPARWRIGGKVEIAPFTPPDVENLLMCWLSEQQQVQWREQGQIDFALTLVDSRRLRA
SAFSHQQGTSLALRLLPLECPRLDDLQTPEAIPELLHGENGLVLVTGATGSGKSTTLAAMVEYLNQHIAGHILTLEDPIE
YRYTSQRCLIQQREVGVHCASFAAGLRGALREDPDVILLGELRDVETIRLALTAAETGHLVLATLHTRGAAQAIARLVDT
FPAQEKDPVRNQLADSLRAVLSQKLEEDKQGGRVALFELLVNTPAVGNLIREGKTHQLPGVIQTGQQTGMQTFAQSQQQR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=699264 NFJ78_RS03960 WP_279262782.1 810286..811266(+) (pilT) [Citrobacter braakii strain RHB13-SO-C07]
ATGAATATGGAAGAAATAGTGGCCCTTAGTGTAAAGCATAACGTGTCGGATCTACACCTGTGCAATGCATGGCCTGCGCG
CTGGCGCATAGGTGGAAAAGTCGAAATAGCACCATTTACTCCCCCTGACGTGGAGAATCTGCTGATGTGCTGGCTCAGTG
AGCAACAACAGGTACAGTGGCGGGAACAGGGGCAGATTGATTTTGCCCTTACGCTGGTGGACTCCCGGCGTCTACGCGCC
AGCGCATTTTCTCATCAACAGGGAACCTCGCTGGCGCTAAGATTGCTACCGCTTGAATGTCCTCGTTTAGACGATCTCCA
GACCCCGGAGGCCATACCTGAACTGCTGCACGGTGAAAATGGATTAGTTCTGGTCACTGGAGCCACCGGCAGCGGTAAAT
CAACCACCCTGGCGGCGATGGTGGAGTACCTTAATCAACATATTGCGGGGCATATTCTGACTCTGGAAGATCCGATTGAA
TATCGCTACACCAGCCAGCGTTGTCTTATTCAACAGCGGGAGGTGGGCGTACACTGCGCTTCTTTTGCTGCCGGTTTGCG
CGGCGCGTTACGCGAAGATCCCGACGTCATTTTGCTGGGCGAGCTGCGCGACGTGGAAACTATTCGTTTGGCCTTAACGG
CAGCGGAGACCGGGCATCTGGTGTTGGCAACCTTACATACGCGAGGGGCGGCGCAGGCCATCGCGCGGCTGGTGGACACC
TTTCCCGCTCAGGAGAAAGATCCGGTGCGTAACCAGCTGGCAGACAGCCTGCGGGCGGTACTTTCGCAAAAGTTGGAGGA
AGATAAGCAGGGAGGACGCGTGGCGCTATTCGAACTGCTCGTCAACACTCCCGCCGTGGGCAATTTGATCCGCGAAGGGA
AAACGCATCAGCTACCCGGTGTGATTCAAACCGGGCAGCAGACAGGTATGCAGACGTTTGCACAAAGTCAGCAGCAGCGC
CAGGCGCAGGGGCGACTTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(60-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.765

100

0.509
  pilT Vibrio cholerae strain A1552

50.765

100

0.509
  pilT Neisseria meningitidis 8013

46.341

100

0.466
  pilT Neisseria gonorrhoeae MS11

46.037

100

0.463
  pilT Acinetobacter baylyi ADP1

46.177

100

0.463
  pilT Acinetobacter baumannii D1279779

45.872

100

0.46
  pilT Acinetobacter baumannii strain A118

45.872

100

0.46
  pilT Pseudomonas stutzeri DSM 10701

45.872

100

0.46
  pilT Legionella pneumophila strain ERS1305867

47.17

97.546

0.46
  pilT Legionella pneumophila strain Lp02

47.17

97.546

0.46
  pilT Acinetobacter nosocomialis M2

45.566

100

0.457
  pilT Pseudomonas aeruginosa PAK

45.566

100

0.457
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.271

97.239

0.411
  pilU Pseudomonas stutzeri DSM 10701

38.788

100

0.393
  pilU Vibrio cholerae strain A1552

39.13

98.773

0.386
  pilU Acinetobacter baylyi ADP1

36.728

99.387

0.365